PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153466.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 740aa MW: 84341.9 Da PI: 8.23

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153466.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57	6.5e-18	64	164	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fY++Y ++vGF++r s+ + r+g+ ++++ C +eg++++ ++ ++ +r+r+++rtgC+a+++ k + ++vt++ + XP_019153466.1 64 EFYKHYDSKVGFDTRSSSVVTA-RDGTKIQKQILCDREGFKNTGAQHchsqssadagegPSRPKRRRVSNRTGCRARIMFKYIGAAGYQVTTFIE 157 6************9998887.888899**********999999***999899999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019153466.1 158 KHNHSMS 164 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence
MEEFDRVPID IQSINNPSLS PSISSNGHTL TISPGMTQYW TPHCEYEIQP AVDMIFKTSD 60 AGIEFYKHYD SKVGFDTRSS SVVTARDGTK IQKQILCDRE GFKNTGAQHC HSQSSADAGE 120 GPSRPKRRRV SNRTGCRARI MFKYIGAAGY QVTTFIEKHN HSMSSVLARQ FLKGNRNISS 180 VHQKFILDCA KANIGATKSH GLYSQIVGDY FEVGANVVDF KNVKRDLRAY ILGADAQILV 240 HNLIKKQEMC PAFAFDYEVD EDEQMSRLFW ADPMSKKNFA VVGDVVSFDA TYSTNRYDLA 300 MGMEPRIIVT DQDPAMKVAI PTVFKQARHR YCMWHIMCKV GEKVGPTLNK DEEFRNKLNS 360 IVWTSSLEPP DFEKQWRELM EKTTSRSESE NYTYSRFTGP QSSLVEFMMN FDSALKSQRN 420 TNAKLNSDNK GYNPDMKTPL GIEKHASIVY TITVFYQVQD EICASCFKCM VLSVREDGGM 480 LHYDIMDGKN KRFTVVHNVN DHEAKCSCKM FEMVGLLCRH IFVVFRDLER IPLKYVVNQW 540 TKDASLKATF EIDGVIYDQN GPKDEMKMLL NKVWFDIHCC MDLAGSNMEQ LTAFSQVINE 600 QKQLLLSGKE KLSPQHSRRT VIESYCGSTE ISEINILPPK QARNKGSGKR IKSSKELAME 660 KQESRKCNFY GVRGDHHDTR TCPLNPKNKD KQKGKKKYFE DISSGSGSIR HITSHSQMLN 720 SQPLDVVWKL DDELEAENDK

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence

MEEFDRVPID IQSINNPSLS PSISSNGHTL TISPGMTQYW TPHCEYEIQP AVDMIFKTSD  60
AGIEFYKHYD SKVGFDTRSS SVVTARDGTK IQKQILCDRE GFKNTGAQHC HSQSSADAGE  120
GPSRPKRRRV SNRTGCRARI MFKYIGAAGY QVTTFIEKHN HSMSSVLARQ FLKGNRNISS  180
VHQKFILDCA KANIGATKSH GLYSQIVGDY FEVGANVVDF KNVKRDLRAY ILGADAQILV  240
HNLIKKQEMC PAFAFDYEVD EDEQMSRLFW ADPMSKKNFA VVGDVVSFDA TYSTNRYDLA  300
MGMEPRIIVT DQDPAMKVAI PTVFKQARHR YCMWHIMCKV GEKVGPTLNK DEEFRNKLNS  360
IVWTSSLEPP DFEKQWRELM EKTTSRSESE NYTYSRFTGP QSSLVEFMMN FDSALKSQRN  420
TNAKLNSDNK GYNPDMKTPL GIEKHASIVY TITVFYQVQD EICASCFKCM VLSVREDGGM  480
LHYDIMDGKN KRFTVVHNVN DHEAKCSCKM FEMVGLLCRH IFVVFRDLER IPLKYVVNQW  540
TKDASLKATF EIDGVIYDQN GPKDEMKMLL NKVWFDIHCC MDLAGSNMEQ LTAFSQVINE  600
QKQLLLSGKE KLSPQHSRRT VIESYCGSTE ISEINILPPK QARNKGSGKR IKSSKELAME  660
KQESRKCNFY GVRGDHHDTR TCPLNPKNKD KQKGKKKYFE DISSGSGSIR HITSHSQMLN  720
SQPLDVVWKL DDELEAENDK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	130	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-64	FAR1 family protein