PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153487.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 725aa MW: 83998.7 Da PI: 8.6635

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153487.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.9	2.2e-20	35	122	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk++GF+vr ++++++ r ge+ + + Cs+eg+++e k++ +++rr+r+++r+gC+a+++++k ++g ++v+ +e H+H l+ XP_019153487.1 35 EFYEAYAKDAGFDVRHDTKRRN-RFGEVSIKYMLCSREGYKAEPKES-KNKRRRRVSNRIGCRAHMVMTKCDTGGYKVHAIEVRHTHCLC 122 6***************9998.7777999999******9999.99***********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence
MEIREDGTKF WTPSTGKEKT PYEGQRFETV DIGIEFYEAY AKDAGFDVRH DTKRRNRFGE 60 VSIKYMLCSR EGYKAEPKES KNKRRRRVSN RIGCRAHMVM TKCDTGGYKV HAIEVRHTHC 120 LCSDEGKTFL KVNRQLDIGH KTFLTHCAKA NIGPTKAFRL FKEIVGSFTD IGATCIDFCN 180 FRRDLLAYIA EADAQMVIED MFKRKEDNPD FYFDFDIDED AQLTRLFWAD AECRRNYACF 240 GDVMSFDATY NTNRYKLVFV PFTGVDNHKR CITFGAGLIA KEDVESYEWF VNNFKNAMEY 300 TPRCTTTDQD PALKIVVPQT MPTTKHRFCM WHIMSKVGEK VGVALWHNTD FKTALNNIVW 360 DDTLTIDEFE TKWATLMKEY KLEEHRWFGQ LYEVRTSWIP AYFNDILMGG LLRTTSRSES 420 ENSYFGKFTN HHCSLVKFMA QYNSAIGEQR HNQKKVIAEN ESSYPETKTP LSIEKHAATV 480 YTINIFYEFQ QEVWDASFTC HITNKNNVGD ICIYTVEETR GKLFKVTEIP TSKTIECACK 540 KFTRVGILCK HAVLVMKARG YESIPHKYIV PRWTRDACAH PLYDVPWARR RNIPKASETT 600 KVANQLWSEF YNCMGLANGW PDKMEHMLAT LQQLKKDLER ERQQTQDNGN NESVFESLVG 660 ASRPSNIQIK PPQVAKNKVS GKRLKSNKEK ATTKIQKKKQ RTCNICDLPG HNSRTCPEKL 720 TSHEG

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence

MEIREDGTKF WTPSTGKEKT PYEGQRFETV DIGIEFYEAY AKDAGFDVRH DTKRRNRFGE  60
VSIKYMLCSR EGYKAEPKES KNKRRRRVSN RIGCRAHMVM TKCDTGGYKV HAIEVRHTHC  120
LCSDEGKTFL KVNRQLDIGH KTFLTHCAKA NIGPTKAFRL FKEIVGSFTD IGATCIDFCN  180
FRRDLLAYIA EADAQMVIED MFKRKEDNPD FYFDFDIDED AQLTRLFWAD AECRRNYACF  240
GDVMSFDATY NTNRYKLVFV PFTGVDNHKR CITFGAGLIA KEDVESYEWF VNNFKNAMEY  300
TPRCTTTDQD PALKIVVPQT MPTTKHRFCM WHIMSKVGEK VGVALWHNTD FKTALNNIVW  360
DDTLTIDEFE TKWATLMKEY KLEEHRWFGQ LYEVRTSWIP AYFNDILMGG LLRTTSRSES  420
ENSYFGKFTN HHCSLVKFMA QYNSAIGEQR HNQKKVIAEN ESSYPETKTP LSIEKHAATV  480
YTINIFYEFQ QEVWDASFTC HITNKNNVGD ICIYTVEETR GKLFKVTEIP TSKTIECACK  540
KFTRVGILCK HAVLVMKARG YESIPHKYIV PRWTRDACAH PLYDVPWARR RNIPKASETT  600
KVANQLWSEF YNCMGLANGW PDKMEHMLAT LQQLKKDLER ERQQTQDNGN NESVFESLVG  660
ASRPSNIQIK PPQVAKNKVS GKRLKSNKEK ATTKIQKKKQ RTCNICDLPG HNSRTCPEKL  720
TSHEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	88	KRRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-89	FAR1 family protein