PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153500.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 463aa MW: 52524.8 Da PI: 9.1344

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.9	7.9e-19	93	193	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fY++YA +v F++r s+ + r+g+ ++++ vC++eg++++ ++ ++ +r+r+++rtgC+a+++ k +++t++ + XP_019153500.1 93 EFYKHYAAKVWFDTRSSSVVTA-RDGTKIQKQIVCNREGFKNTGAQHcpsqssadagegPSRLKRRRVSNRTGCRARIMFKYIGATGYQITTFIE 186 6************9998887.88889***********99999****999889999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019153500.1 187 KHNHNMS 193 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MAGSTIRPFK RQNGSSSGFV KACNNTIITS CLYVTVPIDI QSTNNPSLSP SSSSNGHTLT 60 ISPGMTQYWT PHCEDEIKPA VDMIFKTLDA GIEFYKHYAA KVWFDTRSSS VVTARDGTKI 120 QKQIVCNREG FKNTGAQHCP SQSSADAGEG PSRLKRRRVS NRTGCRARIM FKYIGATGYQ 180 ITTFIEKHNH NMSSVLARQF LKGNRNISSV HQKFILDCAK ANIGASKSHG LYSNIVGDYS 240 EVGATVVDFK NVIRDLRAYI LGADAQILVH NLIKKQEMCP AFAFDYEVDE DEQMSRLFWA 300 DPMSKKNFAA FGDVVSFDAT YSTNRYDLAM GMEPRIIVTD QDPAMKVAIP TVFKQARHRY 360 CMWHIMCKVG EKVGPTLNKD EEFRNKLNSI VWTSSLEPPD FEKQWRELME KYNLVEHNWF 420 KTMFEARKHW IPAYFRNVFM GGLLRTTSRS ESENYTYSCF TGP

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MAGSTIRPFK RQNGSSSGFV KACNNTIITS CLYVTVPIDI QSTNNPSLSP SSSSNGHTLT  60
ISPGMTQYWT PHCEDEIKPA VDMIFKTLDA GIEFYKHYAA KVWFDTRSSS VVTARDGTKI  120
QKQIVCNREG FKNTGAQHCP SQSSADAGEG PSRLKRRRVS NRTGCRARIM FKYIGATGYQ  180
ITTFIEKHNH NMSSVLARQF LKGNRNISSV HQKFILDCAK ANIGASKSHG LYSNIVGDYS  240
EVGATVVDFK NVIRDLRAYI LGADAQILVH NLIKKQEMCP AFAFDYEVDE DEQMSRLFWA  300
DPMSKKNFAA FGDVVSFDAT YSTNRYDLAM GMEPRIIVTD QDPAMKVAIP TVFKQARHRY  360
CMWHIMCKVG EKVGPTLNKD EEFRNKLNSI VWTSSLEPPD FEKQWRELME KYNLVEHNWF  420
KTMFEARKHW IPAYFRNVFM GGLLRTTSRS ESENYTYSCF TGP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	159	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-55	FAR1 family protein