PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153547.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 635aa MW: 72170.3 Da PI: 8.3822

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153547.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.9	5.1e-11	2	57	31	90
FAR1 31 rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++f+Csk g+++++ k ++ trtgC a ++ +dg w vtk e+ HnHel+ XP_019153547.1 2 KKFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKVHNHELC 57 79********99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence
MKKFCCSKAG YKANSGVKAY SKIDTRTGCG AFVQFDVGDD GLWTVTKHEK VHNHELCVFN 60 KSHILRSHRS VGDNQLLYLQ GLKDSGVALA DGIRFLKHQS GGSPLVGFTS RDAYNSMAAD 120 TVKRRQSTET DFFFDFELDL DARLCSYFWR DGHMRRDYEV FGDLLVHDTT YRTNKYDMIC 180 GSFVGMNHHC MIVMFGCGFL MNERIESFVW LFKAFSRSMG GKSPQTIMTD QYAAMAAAIS 240 KVFPTSRHRL CIWHIETEAE FQFYWTRLVT DYKCHKNTWL EKLYDCREKW CPAFNKDYFS 300 GGILSSQRSE TTNHSISRRL SKTAGLCDFY SSFVSVISEW RSKENGEDFR CAQGVPAMMM 360 EHVKLLSHAR EVYTIEIYFL FEEQFMKGSA CHQEMVLNDG RQQKYHVWRP DIDIIRHEVS 420 FNAANLDISC SCKLMSELGI LCCHCICILH VHCVSSIPDK YILKRWTKKV IDGRNVNIDS 480 MVYNVGVPPS IWVFDISRKF QRLVVSSQDS SIARKLCDEA VDDVKKKVEA EIGHVHIEEC 540 GVSSSSGGVQ NPSSRRLKGE RNKRRSSVIE KKYSLARGRR SAANKAALST KGAVQSLVLE 600 NISKLAGEGY LVHPSSSSSD FVQFSKGLDD NVGVD

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence

MKKFCCSKAG YKANSGVKAY SKIDTRTGCG AFVQFDVGDD GLWTVTKHEK VHNHELCVFN  60
KSHILRSHRS VGDNQLLYLQ GLKDSGVALA DGIRFLKHQS GGSPLVGFTS RDAYNSMAAD  120
TVKRRQSTET DFFFDFELDL DARLCSYFWR DGHMRRDYEV FGDLLVHDTT YRTNKYDMIC  180
GSFVGMNHHC MIVMFGCGFL MNERIESFVW LFKAFSRSMG GKSPQTIMTD QYAAMAAAIS  240
KVFPTSRHRL CIWHIETEAE FQFYWTRLVT DYKCHKNTWL EKLYDCREKW CPAFNKDYFS  300
GGILSSQRSE TTNHSISRRL SKTAGLCDFY SSFVSVISEW RSKENGEDFR CAQGVPAMMM  360
EHVKLLSHAR EVYTIEIYFL FEEQFMKGSA CHQEMVLNDG RQQKYHVWRP DIDIIRHEVS  420
FNAANLDISC SCKLMSELGI LCCHCICILH VHCVSSIPDK YILKRWTKKV IDGRNVNIDS  480
MVYNVGVPPS IWVFDISRKF QRLVVSSQDS SIARKLCDEA VDDVKKKVEA EIGHVHIEEC  540
GVSSSSGGVQ NPSSRRLKGE RNKRRSSVIE KKYSLARGRR SAANKAALST KGAVQSLVLE  600
NISKLAGEGY LVHPSSSSSD FVQFSKGLDD NVGVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-62	FAR1 family protein