PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153614.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 677aa MW: 76407.6 Da PI: 7.486

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153614.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65	2.1e-20	76	160	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk g+++++ k ++ t tgC a ++ +dg w vtk e+ HnHel+ XP_019153614.1 76 VYNSYAYRLGFSVRKGHQRYKGSSNTIQMKKFCCSKAGYKANSGVK----AYSKIDTMTGCGAFVQFDVGDDGLWTVTKHEKVHNHELC 160 7******************99999***********99877....88999******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence
MEDGTEQTNS AVGDWHSIQG DLVIVFAIVP FVSEGIVDGS VSSDQVDVDV DGSSSIPVDQ 60 DLVGLVVSNA NEAFEVYNSY AYRLGFSVRK GHQRYKGSSN TIQMKKFCCS KAGYKANSGV 120 KAYSKIDTMT GCGAFVQFDV GDDGLWTVTK HEKVHNHELC VFNKSHLLRS HRSVGDNQLL 180 YLQGLKDSGV ALADGIRRRQ STETDFFFDF ELDLDARLCS FFWRDGQMRR DYEVFGDLCG 240 FLMNERIESF VWLFKAFSRS MGGKSPQTIM TDQCAAMTAA ISKVFPTSRH RLCIWHIETE 300 AEFQIYWTRL VTDYKCHKNT WLEKLYDCRE KWCPAFNKDY FSGGILSSQR SETTNHSISR 360 RLSKTAGLCD FYSSFVSVIS EWRSKENGED FRCAQGVPAM MMEHVKLLSH ARDVYTIEIY 420 FLFEEQFMKG SACHQEMVLN DGRQQKYHVW RPDIDIIRHE VSFNAANLDI YCSCKLMSEL 480 GILCCHCIRI LHVHCVSSIP DKYILKRWTK KVIDGRNVNI DSMVYNVGVP PSIWVFDISR 540 KFQRLVVSSQ DSSVARKLCD EAVDDVKKKV EAEVGHVHIE ECGVSSSSGG VQNPSSRRLK 600 GERNKRRSGV IEKKYSLARG RRSAANKAAL STKGAVQSLV LENISKLAGD GYLVHPSSSS 660 LDFVQFSKGL DDNVGVD

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence

MEDGTEQTNS AVGDWHSIQG DLVIVFAIVP FVSEGIVDGS VSSDQVDVDV DGSSSIPVDQ  60
DLVGLVVSNA NEAFEVYNSY AYRLGFSVRK GHQRYKGSSN TIQMKKFCCS KAGYKANSGV  120
KAYSKIDTMT GCGAFVQFDV GDDGLWTVTK HEKVHNHELC VFNKSHLLRS HRSVGDNQLL  180
YLQGLKDSGV ALADGIRRRQ STETDFFFDF ELDLDARLCS FFWRDGQMRR DYEVFGDLCG  240
FLMNERIESF VWLFKAFSRS MGGKSPQTIM TDQCAAMTAA ISKVFPTSRH RLCIWHIETE  300
AEFQIYWTRL VTDYKCHKNT WLEKLYDCRE KWCPAFNKDY FSGGILSSQR SETTNHSISR  360
RLSKTAGLCD FYSSFVSVIS EWRSKENGED FRCAQGVPAM MMEHVKLLSH ARDVYTIEIY  420
FLFEEQFMKG SACHQEMVLN DGRQQKYHVW RPDIDIIRHE VSFNAANLDI YCSCKLMSEL  480
GILCCHCIRI LHVHCVSSIP DKYILKRWTK KVIDGRNVNI DSMVYNVGVP PSIWVFDISR  540
KFQRLVVSSQ DSSVARKLCD EAVDDVKKKV EAEVGHVHIE ECGVSSSSGG VQNPSSRRLK  600
GERNKRRSGV IEKKYSLARG RRSAANKAAL STKGAVQSLV LENISKLAGD GYLVHPSSSS  660
LDFVQFSKGL DDNVGVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-47	FAR1 family protein