PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153657.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WOX

Protein Properties

Length: 378aa MW: 42736.6 Da PI: 7.8794

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153657.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.3	4.7e-22	80	139	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psa+++++++++l +++ ++V++WFqN++a+e++ XP_019153657.1 80 SRWNPTPEQLQTLEELYRRgTRTPSADQIQHITAQLrkygKIEGKNVFYWFQNHKARERQ 139 7***************99************************************97 PP
2	Wus_type_Homeobox	116.5	1.3e-37	79	141	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ XP_019153657.1 79 SSRWNPTPEQLQTLEELYRRGTRTPSADQIQHITAQLRKYGKIEGKNVFYWFQNHKARERQKR 141 79***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MWMMGYSDSG DFSMPESFNS RRLRPLMPRP LTSSAASPNP SCALGRIHGN DFVAFNHHLA 60 AMAAEQSKRE FNTHQVVVSS RWNPTPEQLQ TLEELYRRGT RTPSADQIQH ITAQLRKYGK 120 IEGKNVFYWF QNHKARERQK RRRQLESAAA GGAATDNDHP NVNNTNCMEN TERKESGANR 180 TGFEADQQLT KNWPSPSTLI AEKSGSIQRG TKAGMMAECR AEGWVQFEDG AEILQQRRSL 240 DEKNATWLQM MQLSSPSPPP PPPTHHHHHH LISATLPAAS SSAPTAAVAT TMDYYTKQLL 300 KLQPQDHHRQ HHLNFFLDLP NYKDHVDSHG GESQTLQLFP LRSGGTENEN DKDTAEAAMN 360 TTFVNPHYQF FEFLPLKN

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MWMMGYSDSG DFSMPESFNS RRLRPLMPRP LTSSAASPNP SCALGRIHGN DFVAFNHHLA  60
AMAAEQSKRE FNTHQVVVSS RWNPTPEQLQ TLEELYRRGT RTPSADQIQH ITAQLRKYGK  120
IEGKNVFYWF QNHKARERQK RRRQLESAAA GGAATDNDHP NVNNTNCMEN TERKESGANR  180
TGFEADQQLT KNWPSPSTLI AEKSGSIQRG TKAGMMAECR AEGWVQFEDG AEILQQRRSL  240
DEKNATWLQM MQLSSPSPPP PPPTHHHHHH LISATLPAAS SSAPTAAVAT TMDYYTKQLL  300
KLQPQDHHRQ HHLNFFLDLP NYKDHVDSHG GESQTLQLFP LRSGGTENEN DKDTAEAAMN  360
TTFVNPHYQF FEFLPLKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	8e-46	WOX family protein