PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153658.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WOX

Protein Properties

Length: 377aa MW: 42665.5 Da PI: 7.8794

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153658.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.3	4.7e-22	79	138	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psa+++++++++l +++ ++V++WFqN++a+e++ XP_019153658.1 79 SRWNPTPEQLQTLEELYRRgTRTPSADQIQHITAQLrkygKIEGKNVFYWFQNHKARERQ 138 7***************99************************************97 PP
2	Wus_type_Homeobox	116.5	1.3e-37	78	140	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ XP_019153658.1 78 SSRWNPTPEQLQTLEELYRRGTRTPSADQIQHITAQLRKYGKIEGKNVFYWFQNHKARERQKR 140 79***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MWMMGYSDSG DFSMPESFNS RRLRPLMPRP LTSSAASPNP SCALGRIHGN DFVAFNHHLA 60 MAAEQSKREF NTHQVVVSSR WNPTPEQLQT LEELYRRGTR TPSADQIQHI TAQLRKYGKI 120 EGKNVFYWFQ NHKARERQKR RRQLESAAAG GAATDNDHPN VNNTNCMENT ERKESGANRT 180 GFEADQQLTK NWPSPSTLIA EKSGSIQRGT KAGMMAECRA EGWVQFEDGA EILQQRRSLD 240 EKNATWLQMM QLSSPSPPPP PPTHHHHHHL ISATLPAASS SAPTAAVATT MDYYTKQLLK 300 LQPQDHHRQH HLNFFLDLPN YKDHVDSHGG ESQTLQLFPL RSGGTENEND KDTAEAAMNT 360 TFVNPHYQFF EFLPLKN

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MWMMGYSDSG DFSMPESFNS RRLRPLMPRP LTSSAASPNP SCALGRIHGN DFVAFNHHLA  60
MAAEQSKREF NTHQVVVSSR WNPTPEQLQT LEELYRRGTR TPSADQIQHI TAQLRKYGKI  120
EGKNVFYWFQ NHKARERQKR RRQLESAAAG GAATDNDHPN VNNTNCMENT ERKESGANRT  180
GFEADQQLTK NWPSPSTLIA EKSGSIQRGT KAGMMAECRA EGWVQFEDGA EILQQRRSLD  240
EKNATWLQMM QLSSPSPPPP PPTHHHHHHL ISATLPAASS SAPTAAVATT MDYYTKQLLK  300
LQPQDHHRQH HLNFFLDLPN YKDHVDSHGG ESQTLQLFPL RSGGTENEND KDTAEAAMNT  360
TFVNPHYQFF EFLPLKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	5e-44	WOX family protein