PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019153922.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 194aa    MW: 21867.5 Da    PI: 7.5071
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019153922.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-192274456
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    + ++t++q++ Le+ F +n++++ e++ +LA+ lg++ rqV +W+qNrRa++k
  XP_019153922.1 22 KKRLTQDQVKLLEASFDSNKKLDPERKFQLARDLGVPPRQVAIWYQNRRARWK 74
                    5679************************************************9 PP
2HD-ZIP_I/II112.33.2e-3621112293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +k+rl+++qvklLE sF++++kL+perK +lar+Lg+ prqva+W+qnrRAR+k++ lE dy+aL+ ++++  +e+++Leke+ +Lreelk+
  XP_019153922.1  21 NKKRLTQDQVKLLEASFDSNKKLDPERKFQLARDLGVPPRQVAIWYQNRRARWKSQSLELDYSALQVKLESALAEKKHLEKEMGKLREELKR 112
                     79***************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MNFMNSQTKQ KTQSSSSLNH NKKRLTQDQV KLLEASFDSN KKLDPERKFQ LARDLGVPPR  60
QVAIWYQNRR ARWKSQSLEL DYSALQVKLE SALAEKKHLE KEMGKLREEL KRAEEMLVVG  120
ASPSLSQGLQ EGAAIARVSS FSPPSCCDEG MSSSFQDEEG LQFEELYASL VGAEDYGSNT  180
NSSSSWANGK HFWV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-35HD-ZIP family protein