PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019153959.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HB-other

Protein Properties

Length: 756aa MW: 80385.1 Da PI: 4.4596

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019153959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.5	1.6e-06	13	74	6	55
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +f+++++ e+e+ + ++ p+++ LA+k ++ +qV +WFqNrR+ XP_019153959.1 13 RFNPTEVAEMEAILQAhnTQVPTRDVLVSLAEKFsasaersgkvVVQMKQVWNWFQNRRYAL 74 588999999999999545999***********99999999999**************965 PP

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence
MGRPPSNGGP SFRFNPTEVA EMEAILQAHN TQVPTRDVLV SLAEKFSASA ERSGKVVVQM 60 KQVWNWFQNR RYALRAKAAK TPSKVPAPVT HQSEPTIVRT VPQVPQPGPP PPSVTVRPMI 120 QTPQGPQPIA APSVSAGKNG SDSSQMEFEA KSARDGAWYD VASFLSHRSM ETGDPEVLVR 180 FAGFGAEEDE WVNVRRNVRQ RSLPCESSEC VAVLPGDLIL CFQEGKEQAL YFDAHVLDAQ 240 RRRHDVRGCR CRFLVRYDHD QSEIVPLRKI CRRPETDYRL EQLNAESATT KQQKSGTDPQ 300 TANTLRVYAF SETAQKPPAI SSGKPVEPLA KKIKTDEHVH ATTMTSSAHI DGSASTLNPP 360 KAVDHVNAGS NLPPMQQQQA STDAQPGNTL EANAPVESQK PLAESVQKLP AESMPESSAE 420 SKVTPPAEPT SMPPAESMPN PTVQNTEEEE HATVAPISAA ISSVPTPNPV ESTDEQLNPE 480 ENANVAVVAP VAPAISPVTA PNPVEPTDGQ LNPEEHANVA ATVAPAISSV TTPKPVEPTD 540 GQLNPEEHAN VAATVAPAIS SVTTSKPVEP TDGQLNPQEH AIVAASVAPA ISSVTTPNPV 600 EPTDKQLNPE EHPNVAATVA PAISSVTTPN PVEPTDEQLN PEELTNVAET VAPATNSADT 660 SNPTEATDKQ LKAYEQAAPA VAPDSHTDIS VANEYKDVST KDAENVSSEN LGISEIPIQS 720 DVLMEICAAM DEDSNAVADM TGMLDTGGGS ANVQQG

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence

MGRPPSNGGP SFRFNPTEVA EMEAILQAHN TQVPTRDVLV SLAEKFSASA ERSGKVVVQM  60
KQVWNWFQNR RYALRAKAAK TPSKVPAPVT HQSEPTIVRT VPQVPQPGPP PPSVTVRPMI  120
QTPQGPQPIA APSVSAGKNG SDSSQMEFEA KSARDGAWYD VASFLSHRSM ETGDPEVLVR  180
FAGFGAEEDE WVNVRRNVRQ RSLPCESSEC VAVLPGDLIL CFQEGKEQAL YFDAHVLDAQ  240
RRRHDVRGCR CRFLVRYDHD QSEIVPLRKI CRRPETDYRL EQLNAESATT KQQKSGTDPQ  300
TANTLRVYAF SETAQKPPAI SSGKPVEPLA KKIKTDEHVH ATTMTSSAHI DGSASTLNPP  360
KAVDHVNAGS NLPPMQQQQA STDAQPGNTL EANAPVESQK PLAESVQKLP AESMPESSAE  420
SKVTPPAEPT SMPPAESMPN PTVQNTEEEE HATVAPISAA ISSVPTPNPV ESTDEQLNPE  480
ENANVAVVAP VAPAISPVTA PNPVEPTDGQ LNPEEHANVA ATVAPAISSV TTPKPVEPTD  540
GQLNPEEHAN VAATVAPAIS SVTTSKPVEP TDGQLNPQEH AIVAASVAPA ISSVTTPNPV  600
EPTDKQLNPE EHPNVAATVA PAISSVTTPN PVEPTDEQLN PEELTNVAET VAPATNSADT  660
SNPTEATDKQ LKAYEQAAPA VAPDSHTDIS VANEYKDVST KDAENVSSEN LGISEIPIQS  720
DVLMEICAAM DEDSNAVADM TGMLDTGGGS ANVQQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.3	1e-117	HB-other family protein