PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019154159.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HSF

Protein Properties

Length: 345aa MW: 39564.2 Da PI: 4.4068

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019154159.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	116.6	1.5e-36	28	119	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y+++ed++++e+isws+ nsf+v+d+++f++++Lp+yFkhsnf+SF+RQLn+YgF+kv+ e+ weF+++ F g+k+ll++ XP_019154159.1 28 FLSKTYDMVEDPSTDEVISWSAARNSFIVWDSHQFSTTLLPRYFKHSNFSSFIRQLNTYGFRKVDPER---------WEFANEGFLGGQKHLLKT 113 9******************999*************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikr+++ XP_019154159.1 114 IKRRRN 119 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MDDRVTVKLE EETPAPMEGL HEVGPPPFLS KTYDMVEDPS TDEVISWSAA RNSFIVWDSH 60 QFSTTLLPRY FKHSNFSSFI RQLNTYGFRK VDPERWEFAN EGFLGGQKHL LKTIKRRRNV 120 AQSMHQQGTG PCIEIGYFGM EEELERLKRD RNLLMTEIVK LRQQQQSSRA QIVAMEERVR 180 NTERKHQQIM SFLAKIFSNP SFFQQYLDKY ALKKDQRRVE IGQKRRLTMT PSVENLQDID 240 SVAMQSSQEP EVDLEIETDV GSLISAALDN ESSSIMNQSS FASTSGTNIT EDLVPDNIWE 300 ELLGEGLSNE AEVDVEVEDL VAAAETPEWG DDLQDLVDHM GYEDI

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MDDRVTVKLE EETPAPMEGL HEVGPPPFLS KTYDMVEDPS TDEVISWSAA RNSFIVWDSH  60
QFSTTLLPRY FKHSNFSSFI RQLNTYGFRK VDPERWEFAN EGFLGGQKHL LKTIKRRRNV  120
AQSMHQQGTG PCIEIGYFGM EEELERLKRD RNLLMTEIVK LRQQQQSSRA QIVAMEERVR  180
NTERKHQQIM SFLAKIFSNP SFFQQYLDKY ALKKDQRRVE IGQKRRLTMT PSVENLQDID  240
SVAMQSSQEP EVDLEIETDV GSLISAALDN ESSSIMNQSS FASTSGTNIT EDLVPDNIWE  300
ELLGEGLSNE AEVDVEVEDL VAAAETPEWG DDLQDLVDHM GYEDI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	117	LKTIKRR
2	212	218	LKKDQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	1e-113	HSF family protein