PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019154275.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 305aa    MW: 31915.1 Da    PI: 9.5938
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019154275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.8e-063659225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C  ++ t  C++G++C+F H
  XP_019154275.1 36 KSKPCTKYFSTAGCPFGESCHFLH 59
                    7789******************** PP
2zf-CCCH25.42.4e-0899124227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ +     Ck+Gd+C+FaHg+
  XP_019154275.1  99 KTKLCNKYNSAEGCKFGDKCHFAHGE 124
                     89**********************96 PP
3zf-CCCH36.29.8e-12272296126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC++f++ G C +G+rC+FaHg
  XP_019154275.1 272 FKTKLCDNFSK-GSCTFGERCHFAHG 296
                     69*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MYTKKRTRYE AAPNVNGDFK KAKQELDTIS SGIGSKSKPC TKYFSTAGCP FGESCHFLHY  60
VPGGYNAVAQ IMNLAPAPNS RNMPAPPISN GTSSGAAVKT KLCNKYNSAE GCKFGDKCHF  120
AHGEWEIGKP IMPGHEDPRA MGPGPLPGRF GGRMEQQQPV SGPAASFGSS ATAKISVDAS  180
LAGAIIGKSG VNSKQICRQT GVKLSIRDHE TDKTLKNIEL EGTFEQISQA SAMVRELISS  240
LGSVGGPGRA APAAHGGPAH GGPAHGANSS NFKTKLCDNF SKGSCTFGER CHFAHGAAEM  300
RKSGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-88C3H family protein