PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019154687.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 643aa MW: 72700.3 Da PI: 7.4466

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019154687.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.1	8.1e-20	71	157	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA++vGFsvrk +++ + ++++ ++ f+Csk g++ + + + ++ tr gC a+++ +dg w vtk ++ HnHel+ XP_019154687.1 71 LYNNYAYRVGFSVRKGNQRCKVYSKTVQMKMFMCSKAGFKVKANAG--VRAYSKIDTRSGCGACVQFDVGEDGLWTVTKHVKVHNHELC 157 7*************************************998877..888899********************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence
MDDAVDQRDE ALDQRDEAGD ELHTVPVSED VVVDSPSSDP IELDIDGSSS NPVDEDLVGV 60 VVSNGVEAYE LYNNYAYRVG FSVRKGNQRC KVYSKTVQMK MFMCSKAGFK VKANAGVRAY 120 SKIDTRSGCG ACVQFDVGED GLWTVTKHVK VHNHELCAVD KSHLLRSHRN VGDNQLLYLK 180 DLKKSGVAMA DGIRFLKHQA GGSPLVGFTN RDAYNSIASD TSKRLDGTDS NSLIEIFRKR 240 QSTESDFFFD FETIMTDQCA SMAAAICQVF PTSRHRLCIW HIGENSKKHI KALRNNKDFL 300 DMFNCVLKYT ETEAEFEFYW TRLVTDYKCH KNSWIQKLYD CREKWCPAFN KDYFSGGILS 360 SQRSETTNHS ISRRLSKTAG LCDFYSSFVS VTSEWRSKEN GEDFRCTQGV PNMMMEHVKL 420 LLHAREVYTI EIYFLFEEQF MKGNACHQEM VLNEGCQFKY HVWRPDIDII RHEVSFKLST 480 LDISCSCKLI SELGILCCHC LRILHIHCVS SIPNKYIMKR WTKKVADGRD VNTGSMFCRA 540 GVPPSIWVVE ICRNGAIQNP SNRRSKGERN VRRSSVIEKK YSAARGRRSA ANKVASSTKG 600 VVQSLVLESL SEIAGDGYLV HPSSGSSEFC QYSNDVDDNA VVD

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence

MDDAVDQRDE ALDQRDEAGD ELHTVPVSED VVVDSPSSDP IELDIDGSSS NPVDEDLVGV  60
VVSNGVEAYE LYNNYAYRVG FSVRKGNQRC KVYSKTVQMK MFMCSKAGFK VKANAGVRAY  120
SKIDTRSGCG ACVQFDVGED GLWTVTKHVK VHNHELCAVD KSHLLRSHRN VGDNQLLYLK  180
DLKKSGVAMA DGIRFLKHQA GGSPLVGFTN RDAYNSIASD TSKRLDGTDS NSLIEIFRKR  240
QSTESDFFFD FETIMTDQCA SMAAAICQVF PTSRHRLCIW HIGENSKKHI KALRNNKDFL  300
DMFNCVLKYT ETEAEFEFYW TRLVTDYKCH KNSWIQKLYD CREKWCPAFN KDYFSGGILS  360
SQRSETTNHS ISRRLSKTAG LCDFYSSFVS VTSEWRSKEN GEDFRCTQGV PNMMMEHVKL  420
LLHAREVYTI EIYFLFEEQF MKGNACHQEM VLNEGCQFKY HVWRPDIDII RHEVSFKLST  480
LDISCSCKLI SELGILCCHC LRILHIHCVS SIPNKYIMKR WTKKVADGRD VNTGSMFCRA  540
GVPPSIWVVE ICRNGAIQNP SNRRSKGERN VRRSSVIEKK YSAARGRRSA ANKVASSTKG  600
VVQSLVLESL SEIAGDGYLV HPSSGSSEFC QYSNDVDDNA VVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G19990.1	2e-29	FAR1 family protein