PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019154709.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 221aa    MW: 23766.8 Da    PI: 7.4127
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019154709.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.81.9e-20118152135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  XP_019154709.1 118 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 152
                     ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MMHRCSSSCS CGMYNQSSND YSAGGFSMFF SSPPANQNYN HYYYNEEAPD YDQTLYSSSS  60
SSSVDCTLSL GTPSTRLTSA NERPPSESRR SLSSSSHKSG RGGGGGGGGA DPLVTRRCAN  120
CDTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRASAAAAA AAANGGGAGG MDMMHNSWAH  180
HTQMPYNNYS SPPAYGNEYG YMEDDDRDSA FLSWRLNVHC S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.12e-30GATA family protein