PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019154715.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 253aa MW: 28564.1 Da PI: 9.1406

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019154715.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5.2e-17	12	59	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed ll ++++++G g W+ ++++ g++R++k+c++rw++yl XP_019154715.1 12 KGAWTEQEDNLLRKYIQEFGEGKWHQVPAKAGLNRCRKSCRLRWLNYL 59 79********************************************97 PP
2	Myb_DNA-binding	45	2.4e-14	65	110	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg + +E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l XP_019154715.1 65 RGDFAWDEVDLIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 110 566777999***********.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MDKTAAKTGM KKGAWTEQED NLLRKYIQEF GEGKWHQVPA KAGLNRCRKS CRLRWLNYLR 60 PDIKRGDFAW DEVDLIIRLH KLLGNRWSLI AGRLPGRTAN DVKNYWNTHL KKTAEFGMPS 120 RRQQENGRGN IVIGPPFPPR PPNFSMISSF LSLGTETTTT TTTLPDNDVT KRTFTPSPPT 180 RAMPAESETH WWENLLAIGD RDGAITWSPL TTSGEGDNAV ADGETWSRAI GAGNSMFIEQ 240 GEFSWNDGIW ESN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	6e-54	MYB family protein