PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019154917.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26602.5 Da    PI: 9.8102
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019154917.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.47.8e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev ++ifsstgklye++s
  XP_019154917.1 10 RIDNTTSRQVTFSKRRNGLLKKAKELAILCDAEVGLVIFSSTGKLYEFAS 59
                    8***********************************************86 PP
2K-box85.41.2e-2876171499
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     s++ + ++++ + +q+e+++L+ke+++Lq+++R+l+Ge+L  Ls+k+Lq+Le++L+ slk iR+kK+++l+++i+el +k   +q+en +L kk+
  XP_019154917.1  76 SQQLQDSASELKFWQREATNLRKELHSLQQNHRQLMGEELYGLSVKDLQNLENKLDMSLKGIRAKKEQILINEIQELTRKGTIIQQENLELYKKV 170
                     33333688899*********************************************************************************998 PP

           K-box  99 e 99 
                     +
  XP_019154917.1 171 K 171
                     6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MGRGKIPIRR IDNTTSRQVT FSKRRNGLLK KAKELAILCD AEVGLVIFSS TGKLYEFAST  60
SMKAIMEGYN KTKEQSQQLQ DSASELKFWQ REATNLRKEL HSLQQNHRQL MGEELYGLSV  120
KDLQNLENKL DMSLKGIRAK KEQILINEIQ ELTRKGTIIQ QENLELYKKV KLIQQENLEL  180
YKQAYGKRDP DGAVTKNTTD FTLCRDSLSP MHLQLSCQPQ NFDVMSRASD SG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-93MIKC_MADS family protein