PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155004.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 490aa    MW: 55984.4 Da    PI: 7.7334
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155004.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.41.1e-2987172187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  XP_019155004.1  87 RWPRQETLTLLEIRSRLHPKFKEANQKGPLWDEVSRIMgEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 172
                     8*************************************99******************************98..55667*******85 PP
2trihelix41.43.9e-13350420267
        trihelix   2 WtkqevlaLiearremeerlrr..gklkkplWeevskkmrergf...erspkqCkekwenlnkrykkikeg 67 
                     W++ e+ +Li++r++me+r+++  g+++  lWee+s+km+  g+   + ++ +C++kw +++   k+ ke+
  XP_019155004.1 350 WQEGEITKLIQLRTNMESRFQQhiGCSDDVLWEEISSKMSCMGYngnNNNAAMCRDKWISIKCNNKRRKEN 420
                     *********************8668**************999995545699*******9999888888876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    
MEDHHYGMAD LRPFMSNTSL FTSIPPPQTA DILSAHHYEM VMAPPRPGLH HDFLADSSTS  60
AGAASSGGAG FSGLELETAA AANGSGRWPR QETLTLLEIR SRLHPKFKEA NQKGPLWDEV  120
SRIMGEEHGY QRSGKKCREK FENLYKYYKK TKEGKAGRQD GKHYRFFRQL EALYGETSAI  180
SDQPAGNTFY CNNVVVGNHG GTSFPQASKL SDSLSLSNMN SSDFESTSSG ESDDDDELNS  240
GEKGKKRKGR RGWKCKIKEF IDQKMRKLME KQEAWLEKMM NTIEQKEKER MIREEDWRKQ  300
EVGRMEREHK FWANERAWIE ARDAALMEAL HKLTAKEIPK SPDNHEDQNW QEGEITKLIQ  360
LRTNMESRFQ QHIGCSDDVL WEEISSKMSC MGYNGNNNNA AMCRDKWISI KCNNKRRKEN  420
PANFFTHHNF QINNNGGSLS YSAQQPSPNH HHHHTNTSPN HGGFRFLMGD SAENLWENYV  480
LKPSKGGDNI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245271KKRKGRRGWKCKIKEFIDQKMRKLMEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10000.18e-74Trihelix family protein