PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019155042.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 230aa MW: 24616.9 Da PI: 7.7071

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019155042.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97	2e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+ ++ +++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl+yeA r+ +Pv+Gavg++++++++++q+ XP_019155042.1 2 SCNGCRVLRKGCSENCILRTCLqwiesAEAQGHATVFVAKFFGRAGLMSFISAVPENQRPSLFQSLLYEAAGRTVNPVNGAVGLLWTGNWHVCQA 96 6*******************9999777889************************************************************* PP DUF260 91 kaelall 97 ++e++l+ XP_019155042.1 97 AVETVLR 103 *999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MSCNGCRVLR KGCSENCILR TCLQWIESAE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PSLFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALQPI PEFPGSAVAA 120 EVGEASECTD TLKLQDPGQN PRSKVQKRRR LPDGPASVLQ LADLDLSLNP GFQGFHPKGY 180 GNTSPVPEKR RPGTPSMNSE ESVTTTCFDS RFGGAGDQHG GEPKLLSLFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	151	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-80	LBD family protein