PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155187.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 692aa    MW: 76043.4 Da    PI: 6.0953
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155187.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.81.3e-913336913374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++++++Ae + +g+++ aq +Larl+++ sp g+++qR+a+yf+eAL   l+   ++ + +lp++  s+ + + ++ a+k+fse+sPil+f ++t
  XP_019155187.1 333 DQIYKAAELILTGQFSHAQMILARLNHQLSPVGKSLQRAASYFKEALMLPLLM--PGSSVSLPSRVPSPVDFVFKMGAYKVFSEASPILQFMNFT 425
                     57899***********************************************9..5555569999999999************************ PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                      Nqa+lea+  +e vHi Dfdi+ G+QW +++q+L +R++g   l+iT+++sp++++  e++ ++e L++fA+ +gv+fe +v+  ++++  +++
  XP_019155187.1 426 SNQALLEALGDAEYVHIFDFDIGFGAQWSSFMQELPKRNNG--GLKITAFASPSTHHPLEISLMHESLTQFANDVGVKFELEVVNLDTFDPSSYQ 518
                     **************************************998..8***************************************966655544333 PP

            GRAS 193 eLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerik 284
                       +++p   E++aVn+ +   +l ++  +     +++L+ +k+lsPk+vv  e+ +++++ +F++++l+al+yy +lf+s+ +ak+  + + ++k
  XP_019155187.1 519 LSSFRPsgSEVVAVNFPI--WSLSNHLSA----LPSLLHYIKQLSPKIVVSLERGCERTELPFAHHILNALKYYEVLFESMgAAKV--TPDMANK 605
                     33333376********98..344333344....456*********************************************66664..77999** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +Er+l++++i+++v  +         ++  Wr  +++aGF pv++s+++++qa++++++ +++g++ve++++slvl+W++r+L+++ aWr
  XP_019155187.1 606 MERFLFQPSIESIVQGRLCF----PDQMPPWRTLFTSAGFLPVAFSNFTETQAECIMKRNQVRGFHVEKRQASLVLCWQRRELLTAMAWR 691
                     **************987776....999**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    
MVIWMIGMQY NLQGKGVVSE VGRFGSSISA SSSVPQDAKL KRDGSFGSNE PISVLDKRRS  60
PSPSTSTSAS SSSFGGTAVK DAAAPAAVGD GPKEEWVVGE LQPLVPFEKF GLGLEDWECF  120
LSESGGGGSD QSILRWVSGA EFEDPSFSFK HHEIQGNAGL GDADQTTTGF GALIASDNYV  180
SSSVIPISGS PFSFNSNIGK FGSNSQDSNL NFTPNNLVPV IPGLSFQEPV VNQTQNPTNR  240
NVFVSQSYSI LQEQLPPPAK RQNLEISSNS QLPEIPLVGM SHGLLLGKQQ DFAQQGMMGS  300
GQKPLLVPKQ EEMGNTNLMM PNHQHQQQQV VYDQIYKAAE LILTGQFSHA QMILARLNHQ  360
LSPVGKSLQR AASYFKEALM LPLLMPGSSV SLPSRVPSPV DFVFKMGAYK VFSEASPILQ  420
FMNFTSNQAL LEALGDAEYV HIFDFDIGFG AQWSSFMQEL PKRNNGGLKI TAFASPSTHH  480
PLEISLMHES LTQFANDVGV KFELEVVNLD TFDPSSYQLS SFRPSGSEVV AVNFPIWSLS  540
NHLSALPSLL HYIKQLSPKI VVSLERGCER TELPFAHHIL NALKYYEVLF ESMGAAKVTP  600
DMANKMERFL FQPSIESIVQ GRLCFPDQMP PWRTLFTSAG FLPVAFSNFT ETQAECIMKR  660
NQVRGFHVEK RQASLVLCWQ RRELLTAMAW RC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-99GRAS family protein