PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155349.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 122aa    MW: 14323.8 Da    PI: 11.2076
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155349.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.67.9e-0919471341
                    HHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifs 41
                     s R+ g++K   EL vLC++++a+i++ 
  XP_019155349.1 19 HSTRKRGMFKTLDELTVLCGVDAAIIMYN 47
                    689************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    
MARRRLRLSY NVINLKEKHS TRKRGMFKTL DELTVLCGVD AAIIMYNSFE LGPVVWPSVE  60
EAQQRIARFM NSPDVQQTRR VMSQESFVLG RIQKLSIKLL KVKKNNRERE MNALMHRIFT  120
GE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.11e-19M-type_MADS family protein