PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155435.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 340aa    MW: 36973.3 Da    PI: 8.4745
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155435.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.73.4e-32200256158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RR++Rak+e +kkl +k rkpylheSRh+hAlrR+RgsgGrF
  XP_019155435.1 200 QEPVYVNAKQYHGILRRRESRAKAELQKKL-IKVRKPYLHESRHQHALRRARGSGGRF 256
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MKCRQFLASS VIGHSEIWFS FSKCIKIMQP NSKTANLVGA NPHNIPHSAD SAEPWWKTAG  60
YNSVPPGMVQ GDASDSSSLE QSLDDQSQSD GGVNPEGDDG TEKSQTSKPS LQGRMLEGSC  120
GGQVDKNLQQ VASVIPDGSD EHLTQPQQLE FVGHSIACAP NPYIDPYFGQ MIAAYGQPLV  180
PPDILDMHRM RMPLPLEMTQ EPVYVNAKQY HGILRRRESR AKAELQKKLI KVRKPYLHES  240
RHQHALRRAR GSGGRFVKKS DSNAPKQTGS GGSLSPRSLT LPGPESFPSG ASNNCQEAVP  300
KPHLHQYINS GGSYGSRCCS QESLYHVHSA ESSGGGSTRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.11e-53NF-YA family protein