PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155438.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 313aa    MW: 33844.6 Da    PI: 7.9707
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155438.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.92.9e-32173229158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RR++Rak+e +kkl +k rkpylheSRh+hAlrR+RgsgGrF
  XP_019155438.1 173 QEPVYVNAKQYHGILRRRESRAKAELQKKL-IKVRKPYLHESRHQHALRRARGSGGRF 229
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MQPNSKTANL VGANPHNIPH SADSAEPWWK TAGYNSVPPG MVQGDASDSS SLEQSLDDQS  60
QSDGGVNPEG DDGTEKSQTS KPSLQGRMLE GSCGGQVDKN LQQVASVIPD GSDEHLTQPQ  120
QLEFVGHSIA CAPNPYIDPY FGQMIAAYGQ PLVPPDILDM HRMRMPLPLE MTQEPVYVNA  180
KQYHGILRRR ESRAKAELQK KLIKVRKPYL HESRHQHALR RARGSGGRFV KKSDSNAPKQ  240
TGSGGSLSPR SLTLPGPESF PSGASNNCQE AVPKPHLHQY INSGGSYGSR CCSQESLYHV  300
HSAESSGGGS TRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.14e-54NF-YA family protein