PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155440.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 309aa    MW: 33387 Da    PI: 7.6792
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.92.9e-32169225158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RR++Rak+e +kkl +k rkpylheSRh+hAlrR+RgsgGrF
  XP_019155440.1 169 QEPVYVNAKQYHGILRRRESRAKAELQKKL-IKVRKPYLHESRHQHALRRARGSGGRF 225
                     69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MQPNSKTANL VGANPHNIPH SADSAEPWWK TAGYNSVPPG MVQGDASDSS SLEQSLDDQS  60
QSDGGVNPEG DDGTEKSQTS KPSLQEGSCG GQVDKNLQQV ASVIPDGSDE HLTQPQQLEF  120
VGHSIACAPN PYIDPYFGQM IAAYGQPLVP PDILDMHRMR MPLPLEMTQE PVYVNAKQYH  180
GILRRRESRA KAELQKKLIK VRKPYLHESR HQHALRRARG SGGRFVKKSD SNAPKQTGSG  240
GSLSPRSLTL PGPESFPSGA SNNCQEAVPK PHLHQYINSG GSYGSRCCSQ ESLYHVHSAE  300
SSGGGSTRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.13e-53NF-YA family protein