PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155558.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24698.4 Da    PI: 10.1957
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155558.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.12.6e-141150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+s+r+ ++ kR+ g+ KK +EL vLC a++a+i++ss
  XP_019155558.1 11 IVNQSKRKASYQKRKRGLVKKLNELTVLCSADAAMIMYSS 50
                    78************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MARRRLRLAY IVNQSKRKAS YQKRKRGLVK KLNELTVLCS ADAAMIMYSS FEQRPVIWPT  60
VERVQELIAR FMQLPDVQQT RRMMSQDSFV AQWLEKLGTQ LLKLKQDNRE KEMNAVMHKI  120
FRGEQIVDYL SSVDLNDLGW VLNTNIAESD LRLVRVSPTL APPSVVALAD VFSGQSYQDM  180
VGMQIPNLNP AWNWTFSNQN DPTQGGPGPS TSQQNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11732RKASYQKRKRGLVKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-30M-type_MADS family protein