PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019155741.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 235aa MW: 25975.8 Da PI: 5.1697

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019155741.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120.3	2.3e-37	27	112	2	85
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasns 85 a+k+++++++h kv+gR+RR+R++a caar+F+L++eLG+++d++ti+WLlqqa+pai ++tgt++++as+ + s+s++ + XP_019155741.1 27 APKRSSNKDRHKKVDGRGRRIRMPAMCAARIFQLTRELGHKTDGETIQWLLQQAEPAIMAATGTGTIPASALavaA-AGGSVSEQGN 112 89*******************************************************************8876632.3333333322 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MGENKAAEMK LKSPAESKEQ EERKQEAPKR SSNKDRHKKV DGRGRRIRMP AMCAARIFQL 60 TRELGHKTDG ETIQWLLQQA EPAIMAATGT GTIPASALAV AAAGGSVSEQ GNSVSVLNLN 120 SRLDEFGGII TSDWRPQMPP DDGAWSFVQN SSCELGNQIL NSNPRLGFHG FEFPNPESFS 180 QEDLPGLELG LSQEGRYGTI NFQSLPQFYQ RMGQTENPMN HNQDSQVDDD GQDRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	7e-52	TCP family protein