PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019155746.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CAMTA

Protein Properties

Length: 965aa MW: 107853 Da PI: 6.2277

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019155746.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	172.4	6.2e-54	14	127	4	116
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 e + rwlk+ e++ iL+n+e+h++++e++++p sgsl+L+n++++r+frkDG+sw++k+dg+tv E+he+LKvg+ e+l+cyYah+e+np+fqrr XP_019155746.1 14 EaQGRWLKPAEVLFILQNHENHQIAHEPPQKPGSGSLFLFNKRVLRFFRKDGHSWRRKRDGRTVGEAHERLKVGSAEALNCYYAHGEQNPNFQRR 108 4489***************************************************************************************** PP CG-1 98 cywlLeeelekivlvhyle 116 +yw+L+ ++e+ivlvhy++ XP_019155746.1 109 SYWMLDPAYEHIVLVHYRD 127 ***************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence
MTEAGYNFSD LIREAQGRWL KPAEVLFILQ NHENHQIAHE PPQKPGSGSL FLFNKRVLRF 60 FRKDGHSWRR KRDGRTVGEA HERLKVGSAE ALNCYYAHGE QNPNFQRRSY WMLDPAYEHI 120 VLVHYRDINE GRQTAGFMSQ FSPVSSTSSQ SPSPYSTQYA GSSVIVNESY EPYSSPGSVE 180 ISSHAATTSN GISQSSIREG VDEVSSSSAR EMSLALRKLE EQLSLNDDSF KEIDPLYNDI 240 DNSDGVQNIL DDHSTFTRMP EDSNSLLLQQ HSGYLSEQNH QIPGFEVDPW NEALEGNGNY 300 LDSKLYGKYV YKDDKNMLLA REPVETPENM WFNFDGKEAQ NHSITIPQQV EDFKYPLYSP 360 AANTYRTDPI QYTTLFNQGQ IGISLEADMG LTIAQKQKFT IKEISPDWGY ATAATKVVII 420 GSFLCDPSES EWMCMFGDVE VPVQIIQEGV VRCQAPPHLP GKVNICITTG NRESCSEVRE 480 FEFRVESTSN INSTVPETQC TNKSPEELLL LIRFGQMLLS DGSNGKIDSS GLGNDYLEKV 540 KASEDSWSQV IEALLVGSST PNLTIDWFLQ ELLKDKLQQW IFSKSQGKTN SSDCMLSRKE 600 QGLIHMVAGL GFEWALHPIL NAGVSVNFRD IAGWTALHWA ARFGREKMVA ALIASGASAG 660 AVTDPTKQDP IGKTPAAIAA NCGHKGLAGY LSEVALTSHL SSLTLEESEL SKGSADVEAE 720 KTIVSVSTTG ATTNEDELSL KHTLAAVRNA AQAAARIQSA FRAHSFRKRQ QKEVVAFGAG 780 DEYYTLSNDI QGLSAASKLA FRSTRDYNSA ALAIQKKYRG WKGRKDFLTF RQKVVKIQAH 840 VRGYQVRKQY KVCWAVGVLE KVVLRWRRRG VGLRGFRHET DSIDETEDED ILKVFRKQKV 900 DATIDEAVSR VLSMVESPTA RQQYHRILEK YRQAKAKLQG VETEATSSHD PSISSMENDN 960 IYQFA

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence

MTEAGYNFSD LIREAQGRWL KPAEVLFILQ NHENHQIAHE PPQKPGSGSL FLFNKRVLRF  60
FRKDGHSWRR KRDGRTVGEA HERLKVGSAE ALNCYYAHGE QNPNFQRRSY WMLDPAYEHI  120
VLVHYRDINE GRQTAGFMSQ FSPVSSTSSQ SPSPYSTQYA GSSVIVNESY EPYSSPGSVE  180
ISSHAATTSN GISQSSIREG VDEVSSSSAR EMSLALRKLE EQLSLNDDSF KEIDPLYNDI  240
DNSDGVQNIL DDHSTFTRMP EDSNSLLLQQ HSGYLSEQNH QIPGFEVDPW NEALEGNGNY  300
LDSKLYGKYV YKDDKNMLLA REPVETPENM WFNFDGKEAQ NHSITIPQQV EDFKYPLYSP  360
AANTYRTDPI QYTTLFNQGQ IGISLEADMG LTIAQKQKFT IKEISPDWGY ATAATKVVII  420
GSFLCDPSES EWMCMFGDVE VPVQIIQEGV VRCQAPPHLP GKVNICITTG NRESCSEVRE  480
FEFRVESTSN INSTVPETQC TNKSPEELLL LIRFGQMLLS DGSNGKIDSS GLGNDYLEKV  540
KASEDSWSQV IEALLVGSST PNLTIDWFLQ ELLKDKLQQW IFSKSQGKTN SSDCMLSRKE  600
QGLIHMVAGL GFEWALHPIL NAGVSVNFRD IAGWTALHWA ARFGREKMVA ALIASGASAG  660
AVTDPTKQDP IGKTPAAIAA NCGHKGLAGY LSEVALTSHL SSLTLEESEL SKGSADVEAE  720
KTIVSVSTTG ATTNEDELSL KHTLAAVRNA AQAAARIQSA FRAHSFRKRQ QKEVVAFGAG  780
DEYYTLSNDI QGLSAASKLA FRSTRDYNSA ALAIQKKYRG WKGRKDFLTF RQKVVKIQAH  840
VRGYQVRKQY KVCWAVGVLE KVVLRWRRRG VGLRGFRHET DSIDETEDED ILKVFRKQKV  900
DATIDEAVSR VLSMVESPTA RQQYHRILEK YRQAKAKLQG VETEATSSHD PSISSMENDN  960
IYQFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	CAMTA family protein