PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155772.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family AP2
Protein Properties Length: 336aa    MW: 37990.5 Da    PI: 6.3804
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155772.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.9e-153998155
             AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                    s ++GV++++++gr++A+++d  s+n    k+ ++++lg ++ +e Aa a++ a++k++g
  XP_019155772.1 39 SVFRGVTRHRWTGRYEAHLWDkNSWNEaqsKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 98
                    689******************888877877557*************************98 PP
2AP251.42.8e-16141192155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_019155772.1 141 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 192
                     89****99**********99966...3.6*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MAKTSKKDSS RSGSNDDNVV KVKRTRKSVP RDSPPQRSSV FRGVTRHRWT GRYEAHLWDK  60
NSWNEAQSKK GRQVYLGAYD DEEAAAHAYD LAALKYWGQE TILNFPLATY EKELKEMEGQ  120
SKEEYIGSLR RKSSGFSRGV SKYRGVARHH HNGRWEARIG RVFGNKYLYL GTYATQEEAA  180
TAYDMAAIEY RGLNAVTNFD LSRYVKWLRP DDQNPNNLQP NPNPSNDAVS HHHDELIITT  240
QQQQQPQQSS GGSSETASPP PHDPSAASAT SSASTNFPTT PPEPELEPDR PRRSFPDDIQ  300
TYFDCDDSSS FVEEHDIIFG DLSSFDSSMF HCELDA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.13e-96AP2 family protein