PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019155846.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 399aa MW: 44003.5 Da PI: 4.6613

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019155846.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.4	9.2e-12	232	275	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L XP_019155846.1 232 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 275 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MEYYENGFLE ELLALRSDSW EAGDIIPVGM GMGMNRNNID DFYCYNNYYS NNNVVNGNGG 60 FDCVEDEKQM MVPIIPGGGC CSAATTTAAT TATSTATTAS FDDCYANYLP FEQSFNSSSS 120 CFFNDLYTEL SPQLTESSNI KLGTPPPFPA SYHEELLSSS PAGIFDEEAN NCFHNTHSCK 180 MEPAVYQYGG GGGGGGGGCE VVQPGVTFNI GSSGPEKKPK SKKLHGQPSK NLMAERRRRK 240 RLNDRLSMLR SIVPKISKMD RTSILGDTID YMKELLERIN HLQEEMEVGP DQLRLMSIFK 300 DVKPDEMSVR NSPKFDVERR EVSDTRVEIC CSAKPGLLLS TVTTLEALGL EIQQCVISCF 360 NDFALRASCT QELEQRGVLS TEDIKQALFR NAGYGGRCL

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MEYYENGFLE ELLALRSDSW EAGDIIPVGM GMGMNRNNID DFYCYNNYYS NNNVVNGNGG  60
FDCVEDEKQM MVPIIPGGGC CSAATTTAAT TATSTATTAS FDDCYANYLP FEQSFNSSSS  120
CFFNDLYTEL SPQLTESSNI KLGTPPPFPA SYHEELLSSS PAGIFDEEAN NCFHNTHSCK  180
MEPAVYQYGG GGGGGGGGCE VVQPGVTFNI GSSGPEKKPK SKKLHGQPSK NLMAERRRRK  240
RLNDRLSMLR SIVPKISKMD RTSILGDTID YMKELLERIN HLQEEMEVGP DQLRLMSIFK  300
DVKPDEMSVR NSPKFDVERR EVSDTRVEIC CSAKPGLLLS TVTTLEALGL EIQQCVISCF  360
NDFALRASCT QELEQRGVLS TEDIKQALFR NAGYGGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	235	242	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	8e-78	bHLH family protein