PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155860.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 27065.7 Da    PI: 9.5462
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155860.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.16.3e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvt+skRrng++KKA+EL vLCda+v++i++s++gkl+ey+s
  XP_019155860.1  9 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKVSIIMISTSGKLHEYIS 59
                    79***********************************************86 PP
2K-box90.92.4e-3071167197
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yqk+ g++l++++ e++q++l+kL++ ++ L+re+R+++Ge+L++Ls+++L +L +++++s+k iR++K++++ +qie+ +kk ++++e++++L 
  XP_019155860.1  71 YQKTVGVDLWNSHFEKMQEQLKKLRDVNRALRREIRQRMGEGLNDLSFEQLTELIEDVDNSIKLIRERKYKVIGNQIETHKKKVRNVEEIHRNLL 165
                     899999***************************************************************************************97 PP

           K-box  96 kk 97 
                      +
  XP_019155860.1 166 LE 167
                     66 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKVSIIMIST SGKLHEYISP  60
STSTKQLFDQ YQKTVGVDLW NSHFEKMQEQ LKKLRDVNRA LRREIRQRMG EGLNDLSFEQ  120
LTELIEDVDN SIKLIRERKY KVIGNQIETH KKKVRNVEEI HRNLLLECEA RQEDPYGLVD  180
HEGDYNSVLG FPNGGPRILA LRLQPDHHHG HHHHHSHLHS GGGSDLTTFT LLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-88MIKC_MADS family protein