PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019155909.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 198aa    MW: 22111.9 Da    PI: 8.0399
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019155909.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.16.4e-151764249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    rie    r  tfskRr+g  KKA EL+ L + ++ +++ s+tgkl+ y
  XP_019155909.1 17 RIEKAGDRFATFSKRRKGFYKKATELCWLSGCDIGIVLTSPTGKLFSY 64
                    8999999**************************************999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    
MEEGKKTRGR QRIPMQRIEK AGDRFATFSK RRKGFYKKAT ELCWLSGCDI GIVLTSPTGK  60
LFSYFNPSPE SIARRLFNRT ENAGGEISLA VDGHSRRQVN ELYEMMDGVE ARMEGLNQRS  120
KVLDQSIPSN TWWDTPVDEF SLEDVERCQA FLAEMQTQVS ARFDALNNGG AGSSSSIAAQ  180
QQNPALFTPL LPSNAPIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-22M-type_MADS family protein