PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019156036.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 327aa MW: 37585.7 Da PI: 8.3941

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019156036.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.6	1e-23	46	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YA+ +GF+vr+s+ kk+ r g i ++++vCs+eg++e++++ +k+rr+r++tr+gC a+++ k++k+g+++vt++e+ H+H l XP_019156036.1 46 EFYMKYASIAGFDVRRSSDKKN-RYGAILRKKMVCSREGFKETKNTGsvvsdaPTKARRRRPSTRVGCMARIVFKRDKTGRYVVTTFEEAHTHCL 139 6**************99998.7888***********999889999999*************************************99 PP FAR1 90 a 90 + XP_019156036.1 140 C 140 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MEDDAWQREC VMDVTPGGNE TWVTECDPNI KPAQGQIFNN LDDGIEFYMK YASIAGFDVR 60 RSSDKKNRYG AILRKKMVCS REGFKETKNT GSVVSDAPTK ARRRRPSTRV GCMARIVFKR 120 DKTGRYVVTT FEEAHTHCLC EESYKPFLKV NRKLDVGHQQ FITNCSKVNV GASKSFDIYA 180 EIVGGVENVG CTQQDFKNYR REVLAYMQGR DAQMVISKYL DIKSDYSDMY FEYEANEKDQ 240 LARVFWADGV ARQKFCAFGD VVSFDATYKT NRYSLVFVPF TGVDNHKKCV TFAAALIARE 300 DVESYCWVLR HFKRGRCVNV IELLVDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-39	FAR1 family protein