PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019156074.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 285aa    MW: 31769.1 Da    PI: 7.8551
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019156074.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+  ++q+G+  +W + ++++g++R++k+c++rw++yl
   XP_019156074.1 14 RGPWSAEEDAKLKAFIEQHGTCgNWISLPQKIGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding38.82.2e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd+++  +    G++ W+ Ia+ ++ gRt++++k++w++
   XP_019156074.1  69 GGFSEEEDKIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MGRSPCCDKN NVKRGPWSAE EDAKLKAFIE QHGTCGNWIS LPQKIGLKRC GKSCRLRWLN  60
YLRPNLKHGG FSEEEDKIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGK  120
QVNDHGHSLR ANQRSNLQPE MVSCGPASSS PSNINIYQNP SCHELVPVAM QPVPYPKEEP  180
GFKDPAHLTD TLPVVNSILS STGMEDCLIN QMVYNVNPQN LEGVEFLCDN IFYNWKVGSS  240
SSTAGGMDWN EINEMQSLVP SPPSPLASSY EGLEPTGKQC AYFKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-76MYB family protein