PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019156075.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 397aa MW: 45353.8 Da PI: 4.5765

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019156075.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.8	4e-13	61	136	10	89
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ++s+ l +p +f e+ gg+ +k+++l++ ++W++++ + + ++ ++++W +Fv++n + gD +vF++ g s XP_019156075.1 61 ETSSQKLEIPISFKESVGGVV--PKKIILRNCFKKVWSMEM--TETEDGLCFQNNWAKFVEDNSITNGDCLVFSYCGYSL 136 4566779********9994..668***********..*****************************987555 PP
2	B3	38.2	2.6e-12	304	379	12	90
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +++ l++p + +++h++ + tl+l+d++g++W+ k+++++ + r++ ++GW++ +k n ++ D+++ ++++ ++ XP_019156075.1 304 NRSALYIPMHVIKDHNIA--LPPTLILRDTRGQEWKSKVKIWRDG-RTWVSEGWQSLCKLNLVDKDDICICEFVHPNTN 379 45669********655..6779***********999997.567888****************998765444 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MDCGPHSSMG NLILKLYYLI PFMLLVFNVT RRRRRRRSSD LFLDMAGSVT TFRFCKHFGP 60 ETSSQKLEIP ISFKESVGGV VPKKIILRNC FKKVWSMEMT ETEDGLCFQN NWAKFVEDNS 120 ITNGDCLVFS YCGYSLFDFV LFDQFGCEKI VVKDAQPQVK KEVKEEDEDD DVVVNDDDNN 180 DNDDGDSDDE GDDSNFVNDE DKNEEEDDGG SGDDEDDSDF VIKEVKNEVE EDDEEVKAHM 240 LGFTKSKQKR NNSCGFKKCS GAGEGSSSKK NKNVFDHFGI ELFSSGQYIQ PNNPYFVTKL 300 GPKNRSALYI PMHVIKDHNI ALPPTLILRD TRGQEWKSKV KIWRDGRTWV SEGWQSLCKL 360 NLVDKDDICI CEFVHPNTND MLLQVTIVRG QTTKNME

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MDCGPHSSMG NLILKLYYLI PFMLLVFNVT RRRRRRRSSD LFLDMAGSVT TFRFCKHFGP  60
ETSSQKLEIP ISFKESVGGV VPKKIILRNC FKKVWSMEMT ETEDGLCFQN NWAKFVEDNS  120
ITNGDCLVFS YCGYSLFDFV LFDQFGCEKI VVKDAQPQVK KEVKEEDEDD DVVVNDDDNN  180
DNDDGDSDDE GDDSNFVNDE DKNEEEDDGG SGDDEDDSDF VIKEVKNEVE EDDEEVKAHM  240
LGFTKSKQKR NNSCGFKKCS GAGEGSSSKK NKNVFDHFGI ELFSSGQYIQ PNNPYFVTKL  300
GPKNRSALYI PMHVIKDHNI ALPPTLILRD TRGQEWKSKV KIWRDGRTWV SEGWQSLCKL  360
NLVDKDDICI CEFVHPNTND MLLQVTIVRG QTTKNME

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	36	RRRRRR
2	31	37	RRRRRRR
3	32	37	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53310.1	2e-12	B3 family protein