PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019156215.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 271aa MW: 28144.7 Da PI: 8.3539

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019156215.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.6	9.2e-34	59	132	4	77
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaes 77 + +++hTkv+gR+RRvR++a+caar+F+L++eLG+ + ++ti+WLl qa+pai ++tgt++++as++++++ XP_019156215.1 59 RNAAVKDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRTEGETIQWLLHQAEPAIFAATGTGTTPASAVTTSQ 132 556679************************************************************97773322 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
MGSENVFSGF SQSPNALSPA SGPAQSPLYQ IVHHGTAAAL DNGSGGVNGD QAGEVSRGRN 60 AAVKDRHTKV NGRGRRVRMP ALCAARIFQL TRELGHRTEG ETIQWLLHQA EPAIFAATGT 120 GTTPASAVTT SQSGAIIASR PPPPPLAGMA PLAGMSPRVL PLPIPSSPSF GASMYVAAAA 180 APTNRVHQLS VPCLGNGGGR YMQAAAAAMP EVGLFSITRP CCRFEMIQPS SAQHDFSGNG 240 GRDMTFTSML TQTSPAMNEV EGEPYEDIGK H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	2e-27	TCP family protein