PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019156247.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 205aa MW: 23549 Da PI: 10.1557

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019156247.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.1	5.7e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqv+fskRr g+lKKA+ELSvLCdae+ +i+fs+tgklye+ss XP_019156247.1 9 KRIENATSRQVSFSKRRRGLLKKAFELSVLCDAEITLIVFSPTGKLYEFSS 59 79***********************************************96 PP
2	K-box	63.8	6.3e-22	83	173	9	98
K-box 9 leeakaeslqqe.lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +e+ ++ +++ +a + k++e L++++R+llGe+L+s+s+ +L+q+++qL sl++iR++K+ l ++qi++l++kek l+een +L+k+l XP_019156247.1 83 SSETSLQHVKEDgVAAMSKRVEVLEQSKRKLLGEGLDSCSIDDLHQIQEQLVISLRNIRERKSLLCKQQIDRLREKEKILEEENAELKKRL 173 4555556655543899************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence
MVRGKTELKR IENATSRQVS FSKRRRGLLK KAFELSVLCD AEITLIVFSP TGKLYEFSST 60 SSSNKTIQRY MNNAKNLGQY KKSSETSLQH VKEDGVAAMS KRVEVLEQSK RKLLGEGLDS 120 CSIDDLHQIQ EQLVISLRNI RERKSLLCKQ QIDRLREKEK ILEEENAELK KRLAVSEPQR 180 LYTDVETRLF IGQPETRPPA GDHNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	1e-58	MIKC_MADS family protein