PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019156488.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARR-B
Protein Properties Length: 557aa    MW: 62286.1 Da    PI: 6.3523
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019156488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.21.5e-27311365156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k +++WtpeLH++Fv+aveqL G ++A+P++ile+mkv+gLt+++++SHLQkYR++
  XP_019156488.1 311 KVKVDWTPELHKKFVQAVEQL-GLDQAIPSRILEMMKVEGLTRHNIASHLQKYRMH 365
                     5689*****************.********************************96 PP
2Myb_DNA-binding45.51.7e-14314363248
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                        WT+e+++++v+av+qlG +   +++I ++m  +g+t+ ++ s++qky+
   XP_019156488.1 314 VDWTPELHKKFVQAVEQLGLDqaIPSRILEMMKvEGLTRHNIASHLQKYR 363
                      57***********************************************7 PP
3Response_reg302.6e-11201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealka 92 
                     vl+ d++ + +  +++ le+ +y +v ++++  eal  +  k   +++ ++ +++++  + +++l+  +    +lp i+v+     +++ +++ +
  XP_019156488.1  20 VLLLDEDSNSAAKMKTKLEEMDY-IVSTFQNENEALLAIASKSveFHVAIVEVNISNsNEVFKFLEIVK----DLPTILVSNVYCLNTMMKCIAL 109
                     799999999**************.***************888889************456666666555....588*****9999********** PP

                     TESEEEESS--HHHHHH CS
    Response_reg  93 GakdflsKpfdpeelvk 109
                     Ga +fl Kp + ++l++
  XP_019156488.1 110 GAVEFLQKPLSDDKLRN 126
                     **************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    
MLCTANDLLG WKDFPKGLSV LLLDEDSNSA AKMKTKLEEM DYIVSTFQNE NEALLAIASK  60
SVEFHVAIVE VNISNSNEVF KFLEIVKDLP TILVSNVYCL NTMMKCIALG AVEFLQKPLS  120
DDKLRNIWQH VVHKAFNAGG KDVESLKPVK ESLVSMLQLR STKNEEANTV NSDETEQSTS  180
VQENNRDTLS VCDKYPAPST PQLKQCGRSL DDGECHDQTN LSMEQDSVEH DGESKSVETT  240
YCNSVSETIP AINPPVIKQE RESSPEQAGK NGNSTCSESK DVRANANSEC RDPKKPSGVN  300
SSTGTKANKK KVKVDWTPEL HKKFVQAVEQ LGLDQAIPSR ILEMMKVEGL TRHNIASHLQ  360
KYRMHRRQIL PKEDEWRWPL SRDSTQRSCY PRKPVMAIPQ YHSAPPVVPA GQFYSAWAHP  420
GSYPGAHVWG SPYHYPGWQP TDDWNWKSNT GVYAQAWGCP VMPPPQGSYP TYPQILQNTS  480
GHHRSGGVQD RYNMLEKTYD FQPAEELIDK VVKEAINNPW LPLPLGLKPP STDSVLNELS  540
KQGISTIPPQ TNGSDLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.31e-143ARR-B family protein