PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019156785.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 274aa MW: 30039.7 Da PI: 5.7144

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019156785.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.9	4e-19	123	177	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+++++++ +++e+LA+kl+L rqV vWFqNrRa+ k XP_019156785.1 123 RKKLRLTKEQSVVLEDSFKEHSTLNSKQKEHLARKLNLRPRQVEVWFQNRRARNK 177 788899***********************************************98 PP
2	HD-ZIP_I/II	122.7	1.7e-39	123	212	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq+ +LE+sF+e+++L++++K++lar+L+l+prqv+vWFqnrRAR k+kq+E+d+e L+++yd+l++en+rL++e +eL+++ XP_019156785.1 123 RKKLRLTKEQSVVLEDSFKEHSTLNSKQKEHLARKLNLRPRQVEVWFQNRRARNKLKQTEVDCELLRKCYDSLTDENRRLQRELQELKAK 212 69*************************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MGFEDDSICN TALTLSLLGS SDHDVVAAPG SGCRFHLKSS PPVSDTTCLR PSLTLGGPPP 60 PEEELKFEVA AEEDGTSMAS SFSNSSMKRE REIGGGGEEE VELEIMEPTK GLSGDDDEVV 120 GTRKKLRLTK EQSVVLEDSF KEHSTLNSKQ KEHLARKLNL RPRQVEVWFQ NRRARNKLKQ 180 TEVDCELLRK CYDSLTDENR RLQRELQELK AKTPAAAAAV AVAQPFYMQL SAATPLTMCP 240 SCQRTYGGSG DNSAANIGEK SHYYGSKHNG TIAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	128	TRKKLRL
2	172	180	RRARNKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-57	HD-ZIP family protein