PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019156789.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRF

Protein Properties

Length: 561aa MW: 59903.8 Da PI: 8.6188

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019156789.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78	9e-25	204	248	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+ XP_019156789.1 204 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVES 248 79****************************************986 PP
2	QLQ	61.7	2e-21	134	170	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+Pp+Ll +i+k XP_019156789.1 134 GPFTPSQWMELEHQALIYKYITANVPIPPYLLNPIKK 170 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MDFGGVLDSG VVVACSDTKT ATTATSNALF TAASEAVSDA ETKQKWYGSV GFLKQERTSG 60 ANHAVEDDMR GSKMAKITAA TLPRSPFVGS EPHQMLSFSS SSSSPYYPHA SFGGNPGYGI 120 DGNMHGVMMS GVKGPFTPSQ WMELEHQALI YKYITANVPI PPYLLNPIKK AIESAALSTF 180 GLRVNSLGWG GAGGFHLGFS SNTDPEPGRC RRTDGKKWRC SRDAVADQKY CERHMNRGRH 240 RSRKPVESPS GHPASGATTT TAAKLMPGAS STSSSSSSAA AAAVSGGGAS NSLAFSHHNQ 300 LSNLHLPAAT NHLDRSFLDK EYAGERYQDP TGLSITSPIL KDRQYSSIPK DQNPYEESST 360 LKFGLVCSDS LLNPLSRNYG ASKVVSDREN KSQHPIRQFM DNWPKNPSDR SMVSWPEIDN 420 TQLSISIPMA TSDSREIEAT QMRLGVGGVI NEQNQRQGNW IPIPWESSMG GPLGEVLHGT 480 NSMTSECKNP SALNLMTEGW NGSPKPASSP TGVLQKAVFY SISNSSAGSS PRGKSNKNTN 540 GASPCNEILG ATLMNPSLPA L

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MDFGGVLDSG VVVACSDTKT ATTATSNALF TAASEAVSDA ETKQKWYGSV GFLKQERTSG  60
ANHAVEDDMR GSKMAKITAA TLPRSPFVGS EPHQMLSFSS SSSSPYYPHA SFGGNPGYGI  120
DGNMHGVMMS GVKGPFTPSQ WMELEHQALI YKYITANVPI PPYLLNPIKK AIESAALSTF  180
GLRVNSLGWG GAGGFHLGFS SNTDPEPGRC RRTDGKKWRC SRDAVADQKY CERHMNRGRH  240
RSRKPVESPS GHPASGATTT TAAKLMPGAS STSSSSSSAA AAAVSGGGAS NSLAFSHHNQ  300
LSNLHLPAAT NHLDRSFLDK EYAGERYQDP TGLSITSPIL KDRQYSSIPK DQNPYEESST  360
LKFGLVCSDS LLNPLSRNYG ASKVVSDREN KSQHPIRQFM DNWPKNPSDR SMVSWPEIDN  420
TQLSISIPMA TSDSREIEAT QMRLGVGGVI NEQNQRQGNW IPIPWESSMG GPLGEVLHGT  480
NSMTSECKNP SALNLMTEGW NGSPKPASSP TGVLQKAVFY SISNSSAGSS PRGKSNKNTN  540
GASPCNEILG ATLMNPSLPA L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-66	GRF family protein