PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019156987.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 553aa MW: 64370.1 Da PI: 7.9351

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019156987.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68	2.3e-21	35	127	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAke+GF+vr +++++ r ge+ + + Cs+eg+++e++++ ++++rr+r+++r+gCka+++++k ++g ++v+ +el H+H l+ XP_019156987.1 35 DFYQAYAKEAGFDVRHGSKRRN-RMGEVSIKYMLCSREGYKAERNEAtntaNKRKRRRRVSNRIGCKARMVMTKCDTGGYKVHAMELRHTHCLC 127 6***************9999.6677999999******99999998999999********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MQIQEDGAKY WTPTTQNEKT PYEGQRFETI DIGIDFYQAY AKEAGFDVRH GSKRRNRMGE 60 VSIKYMLCSR EGYKAERNEA TNTANKRKRR RRVSNRIGCK ARMVMTKCDT GGYKVHAMEL 120 RHTHCLCSDK AKPFLKINRQ LDIGHKTFLA HCAKANIGPT KAFRLFKQMV GSFTDLGVTC 180 IDFCNFRRDL LAYIAEADAQ MVIEDMFKRK QENPDFYFDY DIDEEAQLSR IFWADAESRR 240 NYACFGDVMS FEATYSTNRY KLVFVPFTGV DNHKRSITFG AGLIAKEDVE SYEWLLKNFK 300 TAMEYAPRCT ITDQDPALKI VVPQTMPTTR HRFCMWHITT KVGEKVGATL WHNADFKKAL 360 NSIIWDETLT TDEFERKWEQ VMKDYNLEEH RWFTQLYDAR ASWIPAYFND ILMGGLLRTT 420 SRSESENNYF GKFTNHHCSL VEFMAQYNSA IGEQRHNQAK LIAENEGSYP ETKTPLSIKK 480 NAATVYTINI FYELQTEIWE ASFTNHIIHK HNVGDICKYK VEDTDGKMFE VTETPQAEEI 540 ECACKKFNRV GIL

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MQIQEDGAKY WTPTTQNEKT PYEGQRFETI DIGIDFYQAY AKEAGFDVRH GSKRRNRMGE  60
VSIKYMLCSR EGYKAERNEA TNTANKRKRR RRVSNRIGCK ARMVMTKCDT GGYKVHAMEL  120
RHTHCLCSDK AKPFLKINRQ LDIGHKTFLA HCAKANIGPT KAFRLFKQMV GSFTDLGVTC  180
IDFCNFRRDL LAYIAEADAQ MVIEDMFKRK QENPDFYFDY DIDEEAQLSR IFWADAESRR  240
NYACFGDVMS FEATYSTNRY KLVFVPFTGV DNHKRSITFG AGLIAKEDVE SYEWLLKNFK  300
TAMEYAPRCT ITDQDPALKI VVPQTMPTTR HRFCMWHITT KVGEKVGATL WHNADFKKAL  360
NSIIWDETLT TDEFERKWEQ VMKDYNLEEH RWFTQLYDAR ASWIPAYFND ILMGGLLRTT  420
SRSESENNYF GKFTNHHCSL VEFMAQYNSA IGEQRHNQAK LIAENEGSYP ETKTPLSIKK  480
NAATVYTINI FYELQTEIWE ASFTNHIIHK HNVGDICKYK VEDTDGKMFE VTETPQAEEI  540
ECACKKFNRV GIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	91	KRKRRR
2	86	92	KRKRRRR
3	87	91	RKRRR
4	88	93	KRRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-76	FAR1 family protein