PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157001.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 259aa    MW: 29003.9 Da    PI: 6.799
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157001.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.41.6e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k ien  nrqvtfskRr g+ KKA ELS+LCdaevavi+fsstgkl+e+ss
  XP_019157001.1  9 KLIENINNRQVTFSKRRGGLVKKARELSILCDAEVAVIVFSSTGKLFEFSS 59
                    569**********************************************96 PP
2K-box59.51.4e-20841731099
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + ++++  ++e++ L +ei++L+++q  llG+dL+ + l+eL++Le+qL+++l  i+s+K+++l+eq+e+++k+e+ +  en +Lrk++e
  XP_019157001.1  84 KPKNQQLEHTEVEVLSDEISKLKSKQLLLLGKDLKGMGLNELRELEHQLHEGLVGIKSRKDQILMEQLEHSRKQEELALLENDQLRKEIE 173
                     44667778899****************************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MGRGKIDIKL IENINNRQVT FSKRRGGLVK KARELSILCD AEVAVIVFSS TGKLFEFSSK  60
SMEQTLSRYN KRIKSSGMPL VEKKPKNQQL EHTEVEVLSD EISKLKSKQL LLLGKDLKGM  120
GLNELRELEH QLHEGLVGIK SRKDQILMEQ LEHSRKQEEL ALLENDQLRK EIEGFRGFYY  180
PLSATVPAPC IEFYPTENNV SSGKDGVESQ DDIGSDGGFE NENSDTTLQL GLATGGCQKR  240
KTPEPETHST SSGSHLELK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-58MIKC_MADS family protein