PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157015.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 332aa    MW: 37023.3 Da    PI: 6.839
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157015.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-17101154356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa+ k
  XP_019157015.1 101 KKRRLSLEQVKALEKSFEVGNKLEPERKMQLARALGLQPRQIAIWFQNRRARSK 154
                     4558999*********************************************99 PP
2HD-ZIP_I/II128.13.7e-41100191192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrls eqvk+LE+sFe  +kLeperK++lar+Lglqprq+a+WFqnrRAR ktkqlEkdy+ Lkr+++al+++n++L++++++L++el+
  XP_019157015.1 100 EKKRRLSLEQVKALEKSFEVGNKLEPERKMQLARALGLQPRQIAIWFQNRRARSKTKQLEKDYDLLKRQFEALSADNDALKSQNKKLHSELQ 191
                     69**************************************************************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MMNMISGNGI MAAAFVPPLP PAPETSITFQ NPEETQYLSH HHHHDFNGGG NNVSSLLMMR  60
RSVSFTGGME RPWENQNHQE LLRGGDDDTT SDDGCSQLGE KKRRLSLEQV KALEKSFEVG  120
NKLEPERKMQ LARALGLQPR QIAIWFQNRR ARSKTKQLEK DYDLLKRQFE ALSADNDALK  180
SQNKKLHSEL QLMALRNRES KGSGPPSSTT MIINLNKETV EGSWNNNNNN VSENNSIIDV  240
NLGSATTTAD SPLYSNKHHH HHVLPPPPSS ISQTNLHHHL LHPSSCNNKV SDQSPVQDEG  300
YCNMFGAAMD EQAEFLAMAP ASTTFPLSFS FS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149157RRARSKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-52HD-ZIP family protein