PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157017.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 256aa    MW: 28633.6 Da    PI: 6.799
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157017.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.51.5e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k ien  nrqvtfskRr g+ KKA ELS+LCdaevavi+fsstgkl+e+ss
  XP_019157017.1  9 KLIENINNRQVTFSKRRGGLVKKARELSILCDAEVAVIVFSSTGKLFEFSS 59
                    569**********************************************96 PP
2K-box61.43.6e-2176170599
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     sg  l e+k +  ++e++ L +ei++L+++q  llG+dL+ + l+eL++Le+qL+++l  i+s+K+++l+eq+e+++k+e+ +  en +Lrk++e
  XP_019157017.1  76 SGMPLVEKKPKLEHTEVEVLSDEISKLKSKQLLLLGKDLKGMGLNELRELEHQLHEGLVGIKSRKDQILMEQLEHSRKQEELALLENDQLRKEIE 170
                     555577888888999*****************************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MGRGKIDIKL IENINNRQVT FSKRRGGLVK KARELSILCD AEVAVIVFSS TGKLFEFSSK  60
SMEQTLSRYN KRIKSSGMPL VEKKPKLEHT EVEVLSDEIS KLKSKQLLLL GKDLKGMGLN  120
ELRELEHQLH EGLVGIKSRK DQILMEQLEH SRKQEELALL ENDQLRKEIE GFRGFYYPLS  180
ATVPAPCIEF YPTENNVSSG KDGVESQDDI GSDGGFENEN SDTTLQLGLA TGGCQKRKTP  240
EPETHSTSSG SHLELK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.12e-59MIKC_MADS family protein