PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157046.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 313aa    MW: 34733.7 Da    PI: 8.3565
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157046.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.51.7e-32591752106
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................ss 67 
                      g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl+ ak +i+el+ +                             + 
  XP_019157046.1  59 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNVAKNEIDELPPLqlpptgnfnpnlqqwlcsakegvplepptNH 153
                     689*************************************************************5555555554444444444444444332211 PP

             TCP  68 ssasec.eaesssssasnsssgkaaksaakskksqksaas 106
                     +s++e  e                  +++  +++q+++++
  XP_019157046.1 154 KSSKEIaE------------------ADNDDSQDQHNPNK 175
                     11111121..................11122222222221 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MITTEVDFSA TTKPEEGNTS SDHRNVNLNK VSAAIAATPT SSAWTRLKDP RIVRVSRAFG  60
GKDRHSKVCT VRGLRDRRVR LSVPTAIQLY DLQDRLGLNQ PSKVVDWLLN VAKNEIDELP  120
PLQLPPTGNF NPNLQQWLCS AKEGVPLEPP TNHKSSKEIA EADNDDSQDQ HNPNKINLLP  180
RSHNSSSSSS LPNLMMGNAA QFNSFLRWDR HHHHHGGVSE DFHNFNVLPL SSPSGLPHSF  240
FHHPQTIIGG GEFEPSSRQI INFQMLSSGG SQHPSPALLR PPPIHDFTTH SLRPLRFLAP  300
HNHTGSNPSK DPE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08070.12e-44TCP family protein