PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157172.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 215aa    MW: 24760.1 Da    PI: 6.2929
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-2065118356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+ ++t+eql++Le+ Fe++ +++ e++ +LAk+lgL  rq+ vWFqNrRa++k
  XP_019157172.1  65 KKKRLTTEQLDALEKSFEEEIKLDPERKMRLAKELGLHPRQIAVWFQNRRARWK 118
                     56679************************************************9 PP
2HD-ZIP_I/II119.61.7e-3865154291
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     kk+rl++eq+ +LE+sFeee kL+perK++la+eLgl+prq+avWFqnrRAR+k+kqlE+ +++Lk+++d +++e+++Le+ev +Lr+ +
  XP_019157172.1  65 KKKRLTTEQLDALEKSFEEEIKLDPERKMRLAKELGLHPRQIAVWFQNRRARWKAKQLERLCDSLKHQFDLVSREKQKLEEEVVALRSIV 154
                     9*************************************************************************************9765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MEWNNNHLTR PFVPPSDAAS FSFLYTYNYD QFPAGIDMMK SSSSSSVQVG EGAQFMGGVV  60
EKNDKKKRLT TEQLDALEKS FEEEIKLDPE RKMRLAKELG LHPRQIAVWF QNRRARWKAK  120
QLERLCDSLK HQFDLVSREK QKLEEEVVAL RSIVRDEARK KQVSTTEILS GEETVESTSI  180
PSCNVVYNNM FNVVVDDCTT LMPPPYWSTL PSTYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARWKAKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-49HD-ZIP family protein