PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157249.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 383aa    MW: 42274 Da    PI: 6.6263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157249.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.5e-12313358655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er+RR ri +++ +L+el Pk     +k  s a++L  Av++Ik+Lq
  XP_019157249.1 313 SIAERNRRTRISERMKKLQELFPKM----DKQTSTADMLDWAVDHIKELQ 358
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    
MFSSEAPISR ELTGGSASSF LFPPANSGYK NDMQSNEFLK SKEVMGSDLY QQQSSSGGGL  60
MRYRSAPSSF FAGIMDSAAA AAANDAADSF MVNDGSSSSD SETMFSSILN CDSRDLKNSV  120
QFLKPEMAAE ESHKQSSEAQ QMVYEAPEMG SYGVEMEMQA QMRQQQFRNP SNLIRQSSSP  180
AGFFSGFDVM REGGNYNKGN DGLSSNGFNN HINYSSAQSS SSNFMPSIAE NESWNDSSFN  240
CLKRSRDGDF KMLSALNGIE SQNGGERRNC TPGLTHHLSL PSSVEIEKYL HFQQDAVPCK  300
IRAKRGCATH PRSIAERNRR TRISERMKKL QELFPKMDKQ TSTADMLDWA VDHIKELQKQ  360
VQILTDKKAK CTCSSEAQKG GML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-56bHLH family protein