PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157252.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 601aa MW: 67747.2 Da PI: 8.083

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157252.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.8	1.2e-20	80	164	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk +++++ k ++ trtgC+a ++ +dg w vtk e+ HnHel+ XP_019157252.1 80 LYNNYAYRLGFSVRKGHQRYKGSTNTIQMKNFCCSKAAYKANSGVK----AYSKIDTRTGCEAFVQFDVGDDGLWTVTKHEKVHNHELC 164 7******************99999*********9998877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MEDGTEQTNS AVGAGIRFKV FCILLLFLHL FLLLFFSEGI MDGSVSSDQA DVDIDGSSSI 60 PVDQDLVGLV VSNVDEAFEL YNNYAYRLGF SVRKGHQRYK GSTNTIQMKN FCCSKAAYKA 120 NSGVKAYSKI DTRTGCEAFV QFDVGDDGLW TVTKHEKVHN HELCVFNKSH LLRSHRSVGD 180 NQLLYLQGLK DSGVALADGM NHHCMNVMFG CGFLMNERIE SFVWLFKAFL RSMGGKCPQS 240 IMTDQCAAMA AAISKVFPTS RHRLCIWHIE TEAEFQFYWT RLVTDYECHK NTWLEKLYYC 300 REKWCPAFNN DYFSGGILSS QRSETTNHSI YRRLSKTAGS ACHQEMVLND GHQQKYHVWR 360 PDIDIIRHEV SFNPANLDIS CSCKLISELG ILCCHCLRIL HVHCVSSIPD KYILKRWTKK 420 VIDGRNVNID SMVYNVGVPP SIWVFDISRK FQRLVVSSQD NSVARKLCDE AVDDVKKKIE 480 AEIGYVHIEE CGVSSSSGGV QNPSSRRLKG ERNKRRSGVI EKKYSLARGR MSAANKVALS 540 TKGAVQSLVL ENISKLAGDA YLVHPSSSSS DFVQFSKSLD DNDEYHWTSK GSSRIVFVNL 600 I

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MEDGTEQTNS AVGAGIRFKV FCILLLFLHL FLLLFFSEGI MDGSVSSDQA DVDIDGSSSI  60
PVDQDLVGLV VSNVDEAFEL YNNYAYRLGF SVRKGHQRYK GSTNTIQMKN FCCSKAAYKA  120
NSGVKAYSKI DTRTGCEAFV QFDVGDDGLW TVTKHEKVHN HELCVFNKSH LLRSHRSVGD  180
NQLLYLQGLK DSGVALADGM NHHCMNVMFG CGFLMNERIE SFVWLFKAFL RSMGGKCPQS  240
IMTDQCAAMA AAISKVFPTS RHRLCIWHIE TEAEFQFYWT RLVTDYECHK NTWLEKLYYC  300
REKWCPAFNN DYFSGGILSS QRSETTNHSI YRRLSKTAGS ACHQEMVLND GHQQKYHVWR  360
PDIDIIRHEV SFNPANLDIS CSCKLISELG ILCCHCLRIL HVHCVSSIPD KYILKRWTKK  420
VIDGRNVNID SMVYNVGVPP SIWVFDISRK FQRLVVSSQD NSVARKLCDE AVDDVKKKIE  480
AEIGYVHIEE CGVSSSSGGV QNPSSRRLKG ERNKRRSGVI EKKYSLARGR MSAANKVALS  540
TKGAVQSLVL ENISKLAGDA YLVHPSSSSS DFVQFSKSLD DNDEYHWTSK GSSRIVFVNL  600
I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-30	FAR1 family protein