PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157257.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 209aa    MW: 23702.9 Da    PI: 5.0428
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157257.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.11.9e-3571071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrr+C+++Cv+apyf+ +q +++fa+vhk+FGasnv+k+l +lp + r +a+ ++ yeA ar+++P yG+v+ il+lqqq+++lk+e+
  XP_019157257.1   7 SCGACKFLRRRCSSGCVFAPYFCYDQaASNFAAVHKVFGASNVSKMLLHLPVDCRGEAAIAISYEAIARMQNPKYGCVAQILTLQQQVANLKQEI 101
                     6************************978******************************************************************9 PP

          DUF260  95 allkee 100
                     +  +++
  XP_019157257.1 102 ENFEKQ 107
                     987765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MTGPGSSCGA CKFLRRRCSS GCVFAPYFCY DQAASNFAAV HKVFGASNVS KMLLHLPVDC  60
RGEAAIAISY EAIARMQNPK YGCVAQILTL QQQVANLKQE IENFEKQVPR PACEIPEQNT  120
IDEIQFSSKY KNTRINDYMN QDVEQSYLED LSVKPFDRQT TIQHPPTMTR LEDEIILPSY  180
DPDIYDLLDG MEQNIYLQHL LMNSGSIYH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.15e-42LBD family protein