PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157323.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 352aa MW: 38510.9 Da PI: 8.2739

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157323.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.8	1.4e-11	65	91	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++t CkyG rCkF+H++ XP_019157323.1 65 PGEPDCPYYLKTQKCKYGIRCKFNHPK 91 5789*********************96 PP
2	zf-CCCH	40.7	4e-13	110	134	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f+++tG Ck+G++CkF+H++ XP_019157323.1 110 EPLCAFYMKTGKCKFGATCKFHHPK 134 79*********************96 PP
3	zf-CCCH	38.9	1.4e-12	184	207	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_019157323.1 184 EVDCPFYLKTGSCKYGATCRYNHP 207 689********************9 PP
4	zf-CCCH	43.3	6.2e-14	266	291	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+f+++tG+Ck+G+rC+F+H+ XP_019157323.1 266 PGQVECDFYMKTGECKFGERCRFHHP 291 5789*********************9 PP
5	zf-CCCH	38.1	2.5e-12	325	346	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++CkF H+p XP_019157323.1 325 CPYYMKTGTCKYGATCKFDHPP 346 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MLFNYANNSF ASAGSRIPTA PQSSWSGPPG VDIGPAVADP FLSGLKRPSS EVQVAITSES 60 LPERPGEPDC PYYLKTQKCK YGIRCKFNHP KDKDAFENTD VLVLPERPSE PLCAFYMKTG 120 KCKFGATCKF HHPKDIQIQA SAQENGSTSL TGLVDNGEMI GDVKQTVSPA MLHNSKGLPI 180 RLGEVDCPFY LKTGSCKYGA TCRYNHPDRY TINPPTAAIG HAFVTSPAAH LNVGVVNPTA 240 SLFQTFDARM AQTMFGFATT IYPQRPGQVE CDFYMKTGEC KFGERCRFHH PLDRSSPVTS 300 SMEGQQQNVK LSLAGLPRRE GAIHCPYYMK TGTCKYGATC KFDHPPPGEV MG

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MLFNYANNSF ASAGSRIPTA PQSSWSGPPG VDIGPAVADP FLSGLKRPSS EVQVAITSES  60
LPERPGEPDC PYYLKTQKCK YGIRCKFNHP KDKDAFENTD VLVLPERPSE PLCAFYMKTG  120
KCKFGATCKF HHPKDIQIQA SAQENGSTSL TGLVDNGEMI GDVKQTVSPA MLHNSKGLPI  180
RLGEVDCPFY LKTGSCKYGA TCRYNHPDRY TINPPTAAIG HAFVTSPAAH LNVGVVNPTA  240
SLFQTFDARM AQTMFGFATT IYPQRPGQVE CDFYMKTGEC KFGERCRFHH PLDRSSPVTS  300
SMEGQQQNVK LSLAGLPRRE GAIHCPYYMK TGTCKYGATC KFDHPPPGEV MG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-141	C3H family protein