PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157389.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 305aa    MW: 34259.9 Da    PI: 6.8111
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157389.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.52.3e-1524115186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                     +W+++ + +L++a  ++  +l+rg+l+ ++W++v++++     + ++ +r+ +qCk++++ l+k+yk++k+   +     + st+p+f++l+
  XP_019157389.1  24 CWSEEATATLVDAWGRRFMELNRGNLRHKDWQDVADAVnelhgHTKKGRRTDVQCKNRIDTLKKKYKAEKAKIVESdGTLTASTWPFFSRLD 115
                     7*************************************99988888889*******************999866653477888******997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MGEMADSLTA TAPSSRPLPF REDCWSEEAT ATLVDAWGRR FMELNRGNLR HKDWQDVADA  60
VNELHGHTKK GRRTDVQCKN RIDTLKKKYK AEKAKIVESD GTLTASTWPF FSRLDVLIGN  120
SGKQQFPKVS PVMAASASTL PLPSPSPSPL LLSLPSPPIA VPLAYRWPTP AVVLPQKRPA  180
PAMDDSYFRR NYSAVAAAAA AAAATEDKDA NEYDGREESE EEMEASEGIK EEDGIRRLAK  240
AIERFGAIYE RVEGMKRRQM IELEKQRMEF AKDLELQRMQ LFMDTQVQLE KIKQAKRPAS  300
DDIYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.15e-33Trihelix family protein