PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157573.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 695aa MW: 78324.9 Da PI: 8.6235

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157573.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.3	2.2e-17	62	159	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 Y +YA+ +GF+vr ++ k+ r+g+ ++r +vCs+eg + +k ++k+rr+r+++r++C+a++ ++k +g++e+t +++ H+ XP_019157573.1 62 LYTNYARVCGFDVRLHTVKRD-RDGKSIMRYLVCSREGIKGGGISKltgadgdnggKKKQRRRRTSNRVKCRARICLRKVGSGEFEITVFVEGHS 155 7************999888.788899999*****99998899****99********************************* PP FAR1 87 Hela 90 H ++ XP_019157573.1 156 HRMC 159 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence
MSVTVTPELP EGHANEVVSE HVPHGARELV AERTSIWCPD VGSEITPVVG RRFSTLDSGI 60 DLYTNYARVC GFDVRLHTVK RDRDGKSIMR YLVCSREGIK GGGISKLTGA DGDNGGKKKQ 120 RRRRTSNRVK CRARICLRKV GSGEFEITVF VEGHSHRMCS DASKLFMRVN RKLDVAQQAF 180 AANCVRANVG SSKGFKLYRE VTGSYANVGA TDTEFHNFKR DLQVYVDGKD GEMIIEKYSL 240 VFVPFTGVDH HKRCITFAAG LLTKEDVESY SWLLQRFKTA MGTVPTCVIT DQDPAMKIAF 300 AEVLSDCRHR FCMWHIMTKV NEKIGSDMVK DVAFRNKLNG IVWNETISVS EFEEQWHSLM 360 EKYNLATHRW FTKLYTEREF WVPAYFINLP MSGLLRTTSQ SEAENSVYGK CTRPHFSLVE 420 FYVQFEGVLE TQRYKQSKLN AESEGYLPDF KTPLALERYL AQMFTITIFY ELQQEIEAGC 480 FYCRVVGIRE EGDVITYNIR GECTATYTVQ YTPVGNHASC SCKLFERLGL VCRHMFLVFK 540 DAQVKSLPLD YVLPRWCKQV GGGVCCGQCC DVPSPDSGPN RLWNAMHQCA ALVGTNTDRQ 600 TRMLQVLEDL KEEFMSDGSN VTPAKGNNAV IVALCGVAPP TSITIKSLAQ AKNKGIGRRI 660 KSQRELAVLS NGKIWCKCGV CGKYARHNAR SCPYK

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence

MSVTVTPELP EGHANEVVSE HVPHGARELV AERTSIWCPD VGSEITPVVG RRFSTLDSGI  60
DLYTNYARVC GFDVRLHTVK RDRDGKSIMR YLVCSREGIK GGGISKLTGA DGDNGGKKKQ  120
RRRRTSNRVK CRARICLRKV GSGEFEITVF VEGHSHRMCS DASKLFMRVN RKLDVAQQAF  180
AANCVRANVG SSKGFKLYRE VTGSYANVGA TDTEFHNFKR DLQVYVDGKD GEMIIEKYSL  240
VFVPFTGVDH HKRCITFAAG LLTKEDVESY SWLLQRFKTA MGTVPTCVIT DQDPAMKIAF  300
AEVLSDCRHR FCMWHIMTKV NEKIGSDMVK DVAFRNKLNG IVWNETISVS EFEEQWHSLM  360
EKYNLATHRW FTKLYTEREF WVPAYFINLP MSGLLRTTSQ SEAENSVYGK CTRPHFSLVE  420
FYVQFEGVLE TQRYKQSKLN AESEGYLPDF KTPLALERYL AQMFTITIFY ELQQEIEAGC  480
FYCRVVGIRE EGDVITYNIR GECTATYTVQ YTPVGNHASC SCKLFERLGL VCRHMFLVFK  540
DAQVKSLPLD YVLPRWCKQV GGGVCCGQCC DVPSPDSGPN RLWNAMHQCA ALVGTNTDRQ  600
TRMLQVLEDL KEEFMSDGSN VTPAKGNNAV IVALCGVAPP TSITIKSLAQ AKNKGIGRRI  660
KSQRELAVLS NGKIWCKCGV CGKYARHNAR SCPYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-66	FAR1 family protein