PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019157588.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 117aa    MW: 13494.6 Da    PI: 10.4624
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019157588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.42.1e-141150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+s+r+ ++ kR+ g+ KK +EL vLCda++ +i++ss
  XP_019157588.1 11 IVNQSKRKASYQKRKRGVVKKLNELTVLCDADAGMIMYSS 50
                    78************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    
MARRRLNLAY IVNQSKRKAS YQKRKRGVVK KLNELTVLCD ADAGMIMYSS FEQGPVIWPT  60
SERVQELIAR FMQLPDVQQT RRMMSQGSFV AERLENWHSA SKIEARKQGK GDECTDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11732RKASYQKRKRGVVKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.23e-27M-type_MADS family protein